Job Description P0AGC5 Confidence 99.95% Date Thu Jan 5 11:28:45 GMT 2012 Rank 37 Aligned Residues 225 % Identity 19% Template c2xx7B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 2; PDBTitle: crystal structure of 1-(4-(1-pyrrolidinylcarbonyl)phenyl)-3-2 (trifluoromethyl)-4,5,6,7-tetrahydro-1h-indazole in complex with3 the ligand binding domain of the rat glua2 receptor and glutamate4 at 2.2a resolution. Resolution 2.20 Å

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		41	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.													.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	G	E	L	R	V	S	T	.	I	H	T	P	L	T	Y	N	E	I	N	.	.	.	.	.	.	.	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	N	I	S	Q	L	F	D	D	L	D	N	G
Query Conservation											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	K	T	V	V	V	T	T	I	L	E	S	P	Y	V	M	M	K	K	N	H	E	M	L	E	G	N	E	R	Y	E	G	Y	C	V	D	L	A	A	E	I	A	K	H	C	G	F	K	Y	K	L	T	I	V	G	D	G	K	Y	G	A	R	D	A	D	T	K	I	W	N	G	M	V	G	E	L	V	Y	G
Template Known Secondary structure													B	T	T	T	B				T	T		T	T			S	G	G	G			S														T									T	T						B		T	T	T			B									T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																									.	.																																					.	.	.
Query SS confidence																																									.	.																																					.	.	.
Query Sequence		N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	.	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	.	.	.
Query Conservation																																									.	.																																					.	.	.
Alig confidence																																									.	.																																					.	.	.
Template Conservation
Template Sequence		K	A	D	I	A	I	A	P	L	T	I	T	L	V	R	E	E	V	I	D	F	S	K	P	F	M	S	L	G	I	S	I	M	I	K	K	G	T	P	I	E	S	A	E	D	L	S	K	Q	T	E	I	A	Y	G	T	L	D	S	G	S	T	K	E	F	F	R	R	S	K	I	A	V	F	D	K	M	W	T	Y
Template Known Secondary structure		S		S				S	S		B							T	T					S		S											T	T		S			S						T		S	S	S					B	T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
					176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.																																									.	.
Query SS confidence		.	.	.																																									.	.
Query Sequence		.	.	.	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N
Query Conservation		.	.	.																																									.	.
Alig confidence		.	.	.																																									.	.																								.	.
Template Conservation																																																																						.	.
Template Sequence		M	R	S	A	E	P	S	V	F	V	R	T	T	A	E	G	V	A	R	V	R	K	S	K	G	K	Y	A	Y	L	L	E	S	T	M	N	E	Y	I	E	Q	R	K	P	C	D	T	M	K	V	G	G	N	L	D	S	K	G	Y	G	I	A	T	P	K	G	S	S	.	.	L	G	N	A	V	N	L	A	V	L
Template Known Secondary structure						S	S				B	S	S											T	T	T	S															T	S	T	T							S			S											T	T		T	.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	S	E	Q	G	L	L	D	K	L	K	N	K	W	W	Y
Template Known Secondary structure						T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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