Job Description P0AGC5 Confidence 97.85% Date Thu Jan 5 11:28:45 GMT 2012 Rank 74 Aligned Residues 193 % Identity 7% Template c2vpnB_ PDB info PDB header:transport Chain: B: PDB Molecule:periplasmic substrate binding protein; PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata Resolution 1.55 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	.	.	.	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q
Query Conservation																																													.	.	.
Alig confidence																	.	.	.	.	.	.																							.	.	.
Template Conservation																	.	.	.	.	.	.
Template Sequence		N	W	R	Y	A	H	E	E	Y	E	G	D	V	Q	D	.	.	.	.	.	.	V	F	A	Q	A	F	K	G	Y	V	E	D	N	S	D	H	T	V	Q	V	Y	R	F	G	E	L	G	E	S	D	D	I	M	E	Q	T	Q	N	G	I	L	Q	F	V	N	Q	S	P	G	F	T	G	S	L	I	P	S	A	Q
Template Known Secondary structure								S	S		T	T	S				.	.	.	.	.	.														S	S								T	T	S	S		S										T	T	S		S										T	T	T	S	G	G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.							.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
			121	.	.	.	.	.	.	.	.	130																																				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	P	G	P	T	Y	Y	S	V	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L
Query Conservation		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	F	I	P	Y	L	M	P	T	D	M	D	T	V	L	E	F	F	D	E	S	K	A	I	N	E	M	F	P	K	L	Y	A	E	H	G	L	E	L	L	K	M	Y	P	E	G	E	M	V	V	T	A	D	E	P	I	T	S	P	E	D	F	D	N	K	K	I	R	T	M	T	N	P	L	L	A	E	T	Y
Template Known Secondary structure		G	G	G	S	T	T		S		S	S																T								T	T	T																	S	S				S	G	G	G	G	T	T							S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.
Template Sequence		K	A	F	G	A	.	.	.	.	.	.	.	.	.	T	P	T	P	L	P	W	G	E	V	Y	G	G	L	Q	T	G	I	I	D	G	Q	E	N	P	I	F	W	I	E	S	G	G	L	Y	E	V	S	P	N	L	T	F	T	S	H	G	W	F	T	T	A	M	M	A	N	Q	D	F	Y	E	G	L	S	E	E
Template Known Secondary structure					T		.	.	.	.	.	.	.	.	.							G	G	G								T	S		S												T	T	G	G	G	T																										S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		245	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	F	F	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	Q	Q	L	V	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions