Job Description P0AGC5 Confidence 99.93% Date Thu Jan 5 11:28:45 GMT 2012 Rank 40 Aligned Residues 227 % Identity 12% Template c2v3tA_ PDB info PDB header:receptor Chain: A: PDB Molecule:glutamate receptor delta-2 subunit synonym PDBTitle: structure of the ligand-binding core of the ionotropic2 glutamate receptor-like glurdelta2 in the apo form Resolution 2.75 Å

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		43	.	.	.	.	.	.		50	.	.	.	.						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.						.	.	.	.	.																																				.	.	.	.	.	.	.
Query SS confidence									.						.	.	.	.	.																																				.	.	.	.	.	.	.
Query Sequence		G	E	L	R	V	S	T	.	I	H	T	P	L	.	.	.	.	.	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	.	.	.	.	.	.	.	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L
Query Conservation									.						.	.	.	.	.																																				.	.	.	.	.	.	.
Alig confidence									.						.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	R	V	V	T	V	L	E	E	P	F	V	X	V	S	E	N	V	L	G	K	P	K	K	Y	Q	G	F	S	I	D	V	L	D	A	L	S	N	Y	L	G	F	N	Y	E	I	Y	V	A	P	D	H	K	Y	G	S	P	T	W	N	G	L	V	G	E	L	V	F	K	R	A	D	I	G	I	S	A	L
Template Known Secondary structure											B	T	T	T	B							T	T	S						S														T									T	T																	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.			.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	.	.	V	D	D	K	K	G	S	A	E
Query Conservation																																																																							.	.
Alig confidence																																																																							.	.
Template Conservation
Template Sequence		T	I	T	P	D	R	E	N	V	V	D	F	T	T	R	Y	X	D	Y	S	V	G	V	L	L	R	R	S	I	Q	S	L	Q	D	L	S	K	Q	T	D	I	P	Y	G	T	V	L	D	S	A	V	Y	Q	H	V	R	X	K	G	L	N	P	S	X	Y	S	Q	X	W	R	X	I	N	N	N	V	L	E	S	Q
Template Known Secondary structure											S						S															S					T	T			S	S					B	T	T	S											T																	B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		A	G	I	Q	K	V	K	Y	G	N	Y	A	F	V	W	D	A	A	V	L	E	Y	V	A	I	N	D	P	D	C	S	F	Y	T	V	T	V	A	D	R	G	Y	G	I	A	L	Q	H	G	S	P	.	.	Y	R	D	V	F	S	Q	R	I	L	E	L	Q	Q	S	G	D	X	D	I	L	K	H	K	W	W	P
Template Known Secondary structure										S	S																T		T	T										S									T	T		S	.	.	S															T										S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		268	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	G	Q
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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