Job Description P0AGC5 Confidence 99.97% Date Thu Jan 5 11:28:45 GMT 2012 Rank 23 Aligned Residues 223 % Identity 17% Template c2v25B_ PDB info PDB header:receptor Chain: B: PDB Molecule:major cell-binding factor; PDBTitle: structure of the campylobacter jejuni antigen peb1a, an2 aspartate and glutamate receptor with bound aspartate Resolution 1.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.											.																				.	.	.
Query SS confidence																	.	.											.																				.	.	.
Query Sequence		R	I	A	A	I	Q	A	R	G	E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	E	I	.	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	.	.	.	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G
Query Conservation																	.	.											.																				.	.	.
Alig confidence																	.	.											.																				.	.	.											.
Template Conservation																																																														.
Template Sequence		K	L	E	S	I	K	S	K	G	Q	L	I	V	G	V	K	N	D	V	P	H	Y	A	L	L	D	Q	A	T	G	E	I	K	G	F	E	V	D	V	A	K	L	L	A	K	S	I	L	G	D	D	K	K	I	K	L	V	A	V	N	.	A	K	T	R	G	P	L	L	D	N	G	S	V	D	A	V	I	A	T
Template Known Secondary structure										T								S			T	T	T					T	T	T	T				S															S		T	T	S								.	T	T	T							T	T	S		S				S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L
Query Conservation
Alig confidence																																	.																																		.	.
Template Conservation																																	.																																		.	.
Template Sequence		F	T	I	T	P	E	R	K	R	I	Y	N	F	S	E	P	Y	Y	Q	D	A	I	G	L	L	V	L	K	E	K	K	.	Y	K	S	L	A	D	M	K	G	A	N	I	G	V	A	Q	A	A	T	T	K	K	A	I	G	E	A	A	K	K	I	G	I	.	.	D	V	K	F	S	E	F	P	D	Y	P	S	I
Template Known Secondary structure			B							T	T					S		S											G	G	G		.			S	G	G	G	G	T	T							T	T		S													T		.	.								S	S
Template Predicted Secondary structure																																	.																																		.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L
Query Conservation
Alig confidence																													.	.																				.																	.	.
Template Conservation																													.	.																				.																	.	.
Template Sequence		K	A	A	L	D	A	K	R	V	D	A	F	S	V	D	K	S	I	L	L	G	Y	V	D	D	K	S	.	.	E	I	L	P	D	S	F	E	P	Q	S	Y	G	I	V	T	K	K	D	.	D	P	A	F	A	K	Y	V	D	D	F	V	K	E	H	K	.	.	N	E	I	D	A	L	A	K	K	W	G
Template Known Secondary structure							T	T	S	S	S										T	T	T			T	T		.	.				S				S										T	T	.															T		.	.										T	T
Template Predicted Secondary structure																													.	.																				.																	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions