Job Description P0AGC5 Confidence 97.38% Date Thu Jan 5 11:28:45 GMT 2012 Rank 89 Aligned Residues 152 % Identity 13% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		A	R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	.	.
Query Conservation																																																																																.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																									.																														.	.
Template Conservation																	.	.	.	.	.	.	.	.	.																									.
Template Sequence		S	C	G	T	V	R	F	S	D	V	G	W	T	D	I	.	.	.	.	.	.	.	.	.	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	.	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y
Template Known Secondary structure				S								S		T	T		.	.	.	.	.	.	.	.	.														T	T										.					T	S	S	T	T	T	T											S	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.										.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
								119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																							.	.								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																							.	.								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	.	.	P	R	T	L	G	N	L	.	.	.	.	.	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K
Query Conservation		.	.	.	.	.	.																							.	.								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																							.	.								.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S
Template Known Secondary structure				T	T																										T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		184	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		G	S	A	E	L	M	E	.	.	.	.	D	V	I	E	G	K	L	D	Y	T	I	A
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.
Template Conservation
Template Sequence		S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G
Template Known Secondary structure														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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