Job Description P0AGC5 Confidence 99.95% Date Thu Jan 5 11:28:45 GMT 2012 Rank 34 Aligned Residues 215 % Identity 15% Template c2pyyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate Resolution 2.10 Å

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		45	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	R	V	S	T	I	.	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P
Query Conservation								.
Alig confidence								.							.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		L	L	V	A	T	R	V	I	P	P	F	V	L	.	.	.	.	S	N	L	S	G	F	S	I	D	L	W	R	S	I	A	T	Q	I	G	I	E	S	K	L	I	E	Y	S	S	V	P	E	L	I	S	A	I	K	D	N	K	V	N	L	G	I	A	A	I	S	I	T	A	E	R	E	Q	N	F	D	F	S	L
Template Known Secondary structure									B	T	T	T	B	B	.	.	.	.				B	S														T									S	S										T	T	S	S	S				S	S		B									S				S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D
Query Conservation
Alig confidence																	.	.																												.	.	.	.	.	.	.	.
Template Conservation																	.	.																												.	.	.	.	.	.	.	.
Template Sequence		P	I	F	A	S	G	L	Q	I	M	V	R	N	G	D	.	.	I	R	S	I	D	D	L	P	G	K	V	V	A	T	T	A	G	S	T	A	A	T	Y	L	R	E	H	.	.	.	.	.	.	.	.	H	I	S	V	L	E	V	P	K	I	E	E	A	Y	K	A	L	Q	T	K	K	A	D	A	V	V	F	D
Template Known Secondary structure			S														.	.			S	G	G	G		T	T	S						T	T	S									T	.	.	.	.	.	.	.	.	T							S	S										T	T	S	S	S
Template Predicted Secondary structure																	.	.																												.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.									.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G	H	G	D	D	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	V	L	L	F	Y	A	A	N	E	G	K	G	K	V	E	I	V	G	S	I	L	R	E	E	S	Y	G	I	I	L	P	N	N	S	P	Y	R	K	P	I	N	Q	A	L	L	N	L	K	E	N	G	T	Y	Q	S	L	Y	D	K	W	F	D	P	K	N	S	L	E
Template Known Secondary structure										T	T	T	T	T	T	T																			T	T		T	T														T	S										S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions