Job Description P0AGC5 Confidence 48.54% Date Thu Jan 5 11:28:45 GMT 2012 Rank 200 Aligned Residues 161 % Identity 16% Template c2pjuD_ PDB info PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr Resolution 2.10 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																						.										.	.	.	.
Query SS confidence																						.										.	.	.	.
Query Sequence		E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	N	I	S	Q	L	F	D	D	L	.	.	.	.	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T
Query Conservation																						.										.	.	.	.
Alig confidence																						.										.	.	.	.											.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.
Template Sequence		E	L	F	R	D	I	S	L	E	F	D	H	L	A	N	I	T	P	I	Q	L	G	F	E	K	A	V	T	Y	I	R	K	K	L	A	N	E	R	C	D	A	I	I	A	.	.	.	.	.	.	.	A	G	S	N	G	A	Y	L	K	S	R	L	S	V	P	V	I	L	I	K	P	S	G	Y	D	V	L	Q	F
Template Known Secondary structure									T	T	T	T	T	T	S																					T	T				S					.	.	.	.	.	.	.										T	T		S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.								.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		144	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.																																										.	.	.
Query SS confidence						.	.																																										.	.	.
Query Sequence		L	G	N	L	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	.	.	.	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A
Query Conservation						.	.																																										.	.	.
Alig confidence						.	.																							.	.																		.	.	.																									.	.	.	.	.	.
Template Conservation																														.	.																																													.	.	.	.	.	.
Template Sequence		L	A	K	A	G	K	L	T	S	S	I	G	V	V	T	Y	Q	E	T	I	P	A	L	V	A	F	Q	K	.	.	T	F	N	L	R	L	D	Q	R	S	Y	I	T	E	E	D	A	R	G	Q	I	N	E	L	K	A	N	G	T	E	A	V	V	G	A	G	L	I	T	D	L	A	E	E	.	.	.	.	.	.
Template Known Secondary structure					T	T		T	T	S								S	S											.	.			T									S	S														T	T							S										.	.	.	.	.	.
Template Predicted Secondary structure																														.	.																																													.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.												.
Template Conservation		.	.	.	.	.	.	.	.												.
Template Sequence		.	.	.	.	.	.	.	.	A	G	M	T	G	I	F	I	Y	S	A	.	A	T	V	R	Q	A	F	S	D	A	L	D	M	T	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T	S					S	S			.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.												.
Template SS confidence
										169	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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