Job Description P0AGC5 Confidence 99.97% Date Thu Jan 5 11:28:45 GMT 2012 Rank 16 Aligned Residues 218 % Identity 20% Template c2o1mB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:probable amino-acid abc transporter PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572 Resolution 2.00 Å

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		41	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																														.
Query SS confidence											.	.																														.
Query Sequence		A	R	G	E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	.	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K
Query Conservation											.	.																														.
Alig confidence											.	.																														.											.
Template Conservation																																																					.
Template Sequence		K	V	Q	T	I	T	V	G	T	G	T	Q	F	P	N	I	C	F	I	D	E	K	G	D	L	T	G	Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	.	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q	X	E	K	S	K	E	R	E	K
Template Known Secondary structure												S			T	T	T					T	T	S				S														T	T										.	G	G	G						G	G	G	S		S				S
Template Predicted Secondary structure																																																					.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K
Query Conservation																								.
Alig confidence																								.																												.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.
Template Sequence		K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I	E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	.	.	.	.	.	.	.	D	N	G	R	P	F	E	I	A	Y	E	A	N	E	T	A	N	Q	L	K	S	G	R
Template Known Secondary structure							S	S													T	T			S		S	S	G	G	G		T	T																	T	.	.	.	.	.	.	.	T	T	T			S																S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.								.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G
Query Conservation																					.
Alig confidence																					.																					.
Template Conservation																																										.
Template Sequence		A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	Y	F	X	F	N	K	.	N	E	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I	D	D	G	T	L	K	R	L	S	L	K	W	L	G
Template Known Secondary structure			S																	S	S																				G	.	G	G																	T	T										T
Template Predicted Secondary structure																																										.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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