Job Description P0AGC5 Confidence 97.87% Date Thu Jan 5 11:28:45 GMT 2012 Rank 72 Aligned Residues 219 % Identity 11% Template c2i4cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:bicarbonate transporter; PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium Resolution 1.70 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																											.																					.	.	.	.
Query SS confidence																																											.																					.	.	.	.
Query Sequence		A	R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	.	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	.	.	.	.	A	D	L	L	A	A	G	L	V	Y	N	S	E	R
Query Conservation																																											.																					.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																										.																					.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		E	T	A	N	I	K	L	G	.	.	.	.	.	.	.	.	Y	I	P	I	V	E	A	A	P	L	I	I	A	Q	E	K	G	F	F	A	K	Y	G	M	T	G	V	E	V	S	K	Q	A	N	W	A	S	A	R	D	N	V	T	I	G	S	Q	G	G	G	I	D	G	G	Q	W	Q	M	P	M	P	H	L	I
Template Known Secondary structure		S		S						.	.	.	.	.	.	.	.			S	S	G	G	G									T	T					T	T		T								S	S												T	T	T	T	S		S						T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.									.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																							.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																	.	.
Query Sequence		V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	P	R	T	L	G	N	L	T	A	E	.	.	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	.	.	L	K	E
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.																	.	.
Template Conservation
Template Sequence		T	E	G	I	I	T	N	G	N	K	V	P	M	Y	V	L	A	Q	L	I	T	Q	G	N	G	I	A	V	A	P	M	H	E	G	K	G	V	N	L	D	I	T	K	A	A	D	Y	I	K	G	F	N	K	T	N	G	R	K	F	K	A	A	H	T	F	P	N	V	N	Q	D	F	W	I	R	Y	W	F	A	A
Template Known Secondary structure			T	T	T	T	T	T	T													B									G	G	G	T	T	T	T		S	S			G	G	G						T						S	S							S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.
Predicted Secondary structure																																																	.	.																				.	.	.	.
Query SS confidence																																																	.	.																				.	.	.	.
Query Sequence		T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	.	.	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	.	.	.	.	D	G	D	N	T	L	S	A
Query Conservation																																																	.	.																				.	.	.	.
Alig confidence																																																	.	.																				.	.	.	.
Template Conservation
Template Sequence		G	G	V	D	P	D	T	D	I	D	L	L	A	V	P	P	A	E	T	V	Q	G	M	R	N	G	T	M	D	A	F	S	T	G	D	P	W	P	Y	R	I	V	T	E	N	I	G	Y	M	A	G	L	T	A	Q	I	W	P	Y	H	P	E	E	Y	L	A	I	R	A	D	W	V	D	K	N	P	K	A	T	K
Template Known Secondary structure		T	T			T	T	T	T	S																	T									T	T								T	T	S											S	T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.								.	.	.	.	.	.	.	260	.	.	.			.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.												.	.
Query SS confidence											.	.	.	.	.	.	.												.	.
Query Sequence		A	L	L	D	F	F	N	E	M	.	.	.	.	.	.	.	N	E	D	G	T	L	A	R	I	E	E	.	.	K	Y	L	G
Query Conservation											.	.	.	.	.	.	.												.	.
Alig confidence											.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		A	L	L	K	G	I	M	E	A	Q	Q	W	I	D	D	P	K	N	R	P	E	V	V	Q	I	V	S	G	R	N	Y	F	N
Template Known Secondary structure																S	G	G	G										S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions