Job Description P0AGC5 Confidence 98.05% Date Thu Jan 5 11:28:45 GMT 2012 Rank 69 Aligned Residues 248 % Identity 16% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	.	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y
Query Conservation																																																	.	.
Alig confidence														.	.	.	.	.	.																														.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		E	R	P	V	N	X	V	V	P	F	A	A	.	.	.	.	.	.	G	G	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S
Template Known Secondary structure		S	S							S	S		T	.	.	.	.	.	.	T	S																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.							.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		120	.	.	.	.	.	.													.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.									.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.									.
Query Sequence		Q	P	G	P	T	Y	Y	.	.	.	.	.	.	.	.	.	.	.	.	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	.	.	.	.	.	.	.	.	T	A	E	Q	L	T	V	A	.	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.									.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.									.																	.	.
Template Conservation																																																																											.	.
Template Sequence		L	Y	K	N	P	G	Y	E	P	Y	T	S	F	E	P	I	G	L	V	V	D	V	P	X	T	I	I	A	R	G	D	F	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	L	V	E	A	L	.	.	G	V	N	L	L
Template Known Secondary structure		T		S			S	S		T	T	T	S																		T	T		S			S												G	G	G						S		T	T	S														.	.	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	.	.	.	.	.	V	T	W	F	S	P	L	D	G
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E	V	G	I	W	H	G	X	W	A	P	K	G	T
Template Known Secondary structure						S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G	H	G	D	D	F	D	Y	V	D	T	R	T	F	L	R	A	V	D	A	V	L	P	Q	L	K	P	L	F	E	K	Y
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	.	L	G	A	E	V	L	T	N	E	A	N	P	E	A	L	Q	A	K	V	K	Q	Q	V	P	Q	W	A	E	L	F	K	K	A
Template Known Secondary structure																													.	T	T					G	G	G		S																						T
Template Predicted Secondary structure																													.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions