Job Description P0AGC5 Confidence 97.91% Date Thu Jan 5 11:28:45 GMT 2012 Rank 70 Aligned Residues 230 % Identity 12% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	.	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L
Query Conservation																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D	L	P	Y	D	P	I	K	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V
Template Known Secondary structure											T	S										G	G	G										S		T	T	S	S											T						S	T	T	T		S			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.
Query Sequence		V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	.	.	.	.	.	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V
Query Conservation																	.	.	.	.	.	.	.
Alig confidence									.								.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		A	V	N	P	K	F	P	.	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P
Template Known Secondary structure					T	T	S	S	.		S	S										T	S	T	T	T						S		T	T	S														T									S	S											T	S	S	S
Template Predicted Secondary structure									.
Template SS confidence
		120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		206	.	.	.	210	.	.	.																	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.						.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		A	I	S	L	F	Q	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	.	.	.	.	.	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		S	S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	A	L	D	D
Template Known Secondary structure									T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T																		T
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	G	H	G	D	D	F	D	Y	V	D	T	R	T	F	L	R	A	V	D	A	V	L	P	Q	L	K	P	L	F	E	K	Y	A	E	E	I	D
Query Conservation
Alig confidence			.	.	.
Template Conservation			.	.	.
Template Sequence		Q	.	.	.	G	S	A	P	S	G	N	T	P	E	E	F	A	K	E	I	K	E	Q	Y	D	W	A	Q	D	V	V	K	K	Q	N	I	K	L	D
Template Known Secondary structure			.	.	.	T																												S	T	T
Template Predicted Secondary structure			.	.	.
Template SS confidence
		279				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions