Job Description P0AGC5 Confidence 99.92% Date Thu Jan 5 11:28:45 GMT 2012 Rank 41 Aligned Residues 224 % Identity 16% Template c1yaeB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: structure of the kainate receptor subunit glur6 agonist binding domain2 complexed with domoic acid Resolution 3.11 Å

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		41	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60								.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.													.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	G	E	L	R	V	S	T	.	I	H	T	P	L	T	Y	N	E	I	N	.	.	.	.	.	.	.	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	N	I	S	Q	L	F	D	D	L	D	N	G
Query Conservation											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.												.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	N	R	S	L	I	V	T	T	I	L	E	E	P	Y	V	L	F	K	K	S	D	K	P	L	Y	G	N	D	R	F	E	G	Y	C	I	D	L	L	R	E	L	S	T	I	L	G	F	T	Y	E	I	R	L	V	E	D	G	K	Y	G	A	Q	D	D	V	N	G	Q	W	N	G	M	V	R	E	L	I	D	H
Template Known Secondary structure		T	T										B	T	T	T	B						S	S				G	G	G	G			S																							S	S						B		T	T	T			B		S							T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																									.																																					.	.	.	.
Query SS confidence																																									.																																					.	.	.	.
Query Sequence		N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	.	.	.	.
Query Conservation																																									.																																					.	.	.	.
Alig confidence																																									.																																					.	.	.	.
Template Conservation
Template Sequence		K	A	D	L	A	V	A	P	L	A	I	T	Y	V	R	E	K	V	I	D	F	S	K	P	F	M	T	L	G	I	S	I	L	Y	R	K	P	N	I	D	S	A	D	D	L	A	K	Q	T	K	I	E	Y	G	A	V	E	D	G	A	T	M	T	F	F	K	K	S	K	I	S	T	Y	D	K	M	W	A	F	M
Template Known Secondary structure		S		S				S	S		B							T	T							S																S									S	S					B	T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
				176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N
Query Conservation		.	.
Alig confidence		.	.																							.																																									.	.
Template Conservation																										.																																									.	.
Template Sequence		S	S	R	R	Q	S	V	L	V	K	S	N	E	E	G	I	Q	R	V	L	T	S	D	Y	.	A	F	L	M	E	S	T	T	I	E	F	V	T	Q	R	N	C	N	L	T	Q	I	G	G	L	I	D	S	K	G	Y	G	V	G	T	P	M	G	S	P	.	.	Y	R	D	K	I	T	I	A	I	L	Q	L	Q
Template Known Secondary structure				T						B	S	S											S	S		.														T	T		T	T					S	S		S	S										S	S		S	.	.	S
Template Predicted Secondary structure																										.																																									.	.
Template SS confidence
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.		.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.			.	.	.	.	.	.	780	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	G	T	L	A	R	I	E	E	K	Y	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	G	K	L	H	M	M	K	E	K	W	W	R
Template Known Secondary structure				T										S
Template Predicted Secondary structure
Template SS confidence
		787	.	.	790	.	.	.	.	.	.	.	.	.	800

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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