 |
Job Description | P69503 | Confidence | 97.96% | Date | Thu Jan 5 12:11:45 GMT 2012 |
Rank | 65 | Aligned Residues | 102 |
% Identity | 16% | Template | c3dmpD_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:uracil phosphoribosyltransferase; |
PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei
|
Resolution | 2.60 Å |
|
 |
  |   |
59 | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | V | V | G | T | E | A | R | G | F | L | F | G | A | P | V | A | L | G | L | G | . |
. |
. |
V | G | F | V | P | V | R | K | P | G | K | L | P | R | E | T | I | S | E | T | Y | D | L | E | Y | G | T | D | Q | L | E | I | H | V | D | A | I | K | P | G | D | K | V | L | V | V | D | D | L | L | A | T | G | G | T | I |
Query Conservation |   |
  |
|
|
|   |   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|   | . | . | . |   |
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |
|   |
|   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|   |
|   |
Template Sequence |   |
A | I | V | P | V | L | R | A | G | V | G | M | S | D | G | L | L | E | L | I | P | S | A | R | V | G | H | I | G | V | Y | R | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | D | H | R | P | V | E | Y | L | V | R | L | P | D | L | E | D | R | I | F | I | L | C | D | P | M | V | A | T | G | Y | S | A |
Template Known Secondary structure |   |
 |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  |
| T | T |
|  |  |
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | T | S |
|  |  |  |  |  |  |  |
|
|
|
| S | S |
|  |  |  |  |  |
| S |  |  | S | S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
  |
  |   |
136 | . | . | . | 140 | . | . | . | . | . | . | . | |
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | |
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
Query Sequence |   |
E | A | T | V | K | L | I | R | R | L | G | G | . |
. |
E | V | A | D | A | A | F | I | I | N | L | F | D | L | G | G | E | Q | R | L | E | K | Q | . |
. |
G | I | T | S | Y | S |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |
|
| . | . |   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . |
|
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|
|
|   | . | . |   |
|
|   |   |
|   |   |   |   |
|   |
|   |
|   |
|
Template Sequence |   |
A | H | A | I | D | V | L | K | R | R | G | V | P | G | E | R | L | M | F | L | A | L | V | A | A | P | . |
. |
E | G | V | Q | V | F | Q | D | A | H | P | D | V | K | L | Y | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |  |  |  |  |
| S |  |  |
|  | . | . |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|  | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
145 | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | |
|
. | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|