Return to main results Retrieve Phyre Job Id

Job DescriptionP31460
Confidence99.69%DateThu Jan 5 11:47:50 GMT 2012
Rank15Aligned Residues77
% Identity23%Templated3bwga1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain GntR-like transcriptional regulators
Resolution2.09

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 

























Query SS confidence 












































































Query Sequence  DRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNIIREVFRSLMAKRLIEMKRYRGAFVAPRNQWNYLDTDVLQ
Query Conservation 


   
   
  
 
 

  



  

   



 





  
   


    
 
  
               
Alig confidence 












































































Template Conservation   

   
   
  
    
  


   

    


 


 

  
   
 
      
  
              
Template Sequence  QQIATEIETYIEEHQLQQGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKGYISLLSNQ
Template Known Secondary structure 
TT

TT
B


TT

TTSTTT





S


SSGGG
Template Predicted Secondary structure 


























Template SS confidence 












































































   5....10.........20.........30.........40.........50.........60.........70.........80.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions