Return to main results Retrieve Phyre Job Id

Job DescriptionP37671
Confidence100.00%DateThu Jan 5 11:56:42 GMT 2012
Rank2Aligned Residues248
% Identity23%Templatec3r4kD_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
Resolution2.46 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  SLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIHIA
Query Conservation 

 


 


 

      
  


  


  


 


 

   
 
 
      
 

     

             
Alig confidence 



















































..

























Template Conservation 

 
 
 


 

      

 


  


  

  


 

   
 
 
  ..  
 

     
              
Template Sequence  TVSKALTLLTYFNHGRLEIGLSDLTRLSGXNKATVYRLXSELQEAGFVEQVE. . RSYRLGPQVLRLAALREASVPILSAS
Template Known Secondary structure  TT
BTTBS

S
TTS

..


TTS
Template Predicted Secondary structure 















..




Template SS confidence 















































































   3......10.........20.........30.........40.........50.... .....60.........70.........80
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  APHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGHPDYVKSYWESHQHEIQ
Query Conservation     
  
   
  

 
 
  
   
 
     
          
   

  

 

 


 
        
        
Alig confidence 









































































...


Template Conservation     
  

     
  
 
  
   
 
                
   

  

 

 


          
  ...   
Template Sequence  RRVLRELSEDTGETTHLSLLQGEQLASLSHAYSSRNATKVXXEDAEVLTFHGTASGLAVLAYSEPSFVDAVLAA. . . PLT
Template Known Secondary structure  SSTT

SS
SS




TT
TTTSTTS
S...


Template Predicted Secondary structure 




















...
Template SS confidence 















































































   83......90.........100.........110.........120.........130.........140.........150...... ...
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  PLTRNTITELPAMFDELAHIRESGAAMDREENELGVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQ
Query Conservation       
      
   
  

  


    
   

  




    
    



                  
   
 
Alig confidence 















































































Template Conservation              
   
  

  


    
   

  

 

    
  





                  
   
 
Template Sequence  ARTPQTQTDPAAIRAEIAEVRRTGLAQSIGGFEAEVHSHAVPIFGPDRAVLGALAVAAPTSRXTPDQKRTIPPALRAAGL
Template Known Secondary structure 
SSTT



S
SSSSTT
TTS
GGG

Template Predicted Secondary structure 


























Template SS confidence 















































































   160.........170.........180.........190.........200.........210.........220.........230.........
 
   265....270.......
Predicted Secondary structure 






Query SS confidence 












Query Sequence  AISNELGFTVRDD
Query Conservation   

  

      
Alig confidence 












Template Conservation   

  

      
Template Sequence  SLTERIGGACPPE
Template Known Secondary structure  TT



TT
Template Predicted Secondary structure 






Template SS confidence 












   240.........250..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions