Return to main results Retrieve Phyre Job Id

Job DescriptionP37671
Confidence98.21%DateThu Jan 5 11:56:42 GMT 2012
Rank20Aligned Residues81
% Identity16%Templatec2it0A_
PDB info PDB header:transcription/dnaChain: A: PDB Molecule:iron-dependent repressor ider; PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80.........90.........100..
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  SQSLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
Query Conservation 
 

 


 


 

      
  


  


  


 


 

   
 
 
      
 

     

           
Alig confidence 






















































.























Template Conservation 
   



 

  
           

  
 

  

   
  
   


     .  
 

  
   
  
   

  
Template Sequence  VDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD. RHLELTEKGRALAIAVMRKHRLAE
Template Known Secondary structure  SSTT



TT

TTS
TT.


Template Predicted Secondary structure 














.



Template SS confidence 















































































   5....10.........20.........30.........40.........50......... 60.........70.........80...
 
   103.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  IA
Query Conservation    
Alig confidence 

Template Conservation   
Template Sequence  RL
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   84.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions