Job Description P37671 Confidence 100.00% Date Thu Jan 5 11:56:42 GMT 2012 Rank 6 Aligned Residues 241 % Identity 28% Template c2ia2D_ PDB info PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	S	L	F	R	G	L	M	L	I	E	I	L	S	N	Y	P	N	G	C	P	L	A	H	L	S	E	L	A	G	L	N	K	S	T	V	H	R	L	L	Q	G	L	Q	S	C	G	Y	V	T	T	A	P	A	A	G	S	Y	R	L	T	T	K	F	I	A	V	G	Q	K	A	L	S	S	L	N	I	I	H
Query Conservation
Alig confidence																																																				.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.
Template Sequence		V	Q	S	L	A	R	G	L	A	V	I	R	C	F	D	H	R	N	Q	R	R	T	L	S	D	V	A	R	A	T	D	L	T	R	A	T	A	R	R	F	L	L	T	L	V	E	L	G	Y	V	.	.	.	.	.	.	A	A	F	W	L	T	P	R	V	L	E	L	G	Y	S	Y	L	S	S	L	S	L	P	E
Template Known Secondary structure														T			S	S														T																T	T	S	B	.	.	.	.	.	.					B		G	G	G											S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	A	P	H	L	E	A	L	N	I	A	T	G	E	T	I	N	F	S	S	R	E	D	D	H	A	I	L	I	Y	K	L	E	P	T	T	G	M	L	R	T	R	A	Y	I	G	Q	H	M	P	L	Y	C	S	A	M	G	K	I	Y	M	A	F	G	H	P	D	Y	V	K	S	Y	W	E	S	H	Q	H	E
Query Conservation
Alig confidence																																				.																																											.	.
Template Conservation																																				.																																											.	.
Template Sequence		V	A	Q	P	H	L	E	K	L	S	H	K	V	H	E	S	S	S	V	S	I	L	D	G	A	D	I	V	Y	V	A	R	V	P	.	V	S	R	I	X	T	V	G	I	T	I	G	T	R	L	P	A	Y	A	T	S	X	G	R	V	L	L	A	G	L	P	D	D	E	L	D	A	Y	L	E	K	L	.	.	D
Template Known Secondary structure																S									T	T										.	B		S	S	S		B				T	T					G	G	G	S									T	S											T		.	.
Template Predicted Secondary structure																																				.																																											.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		I	Q	P	L	T	R	N	T	I	T	E	L	P	A	M	F	D	E	L	A	H	I	R	E	S	G	A	A	M	D	R	E	E	N	E	L	G	V	S	C	I	A	V	P	V	F	D	I	H	G	R	V	P	Y	A	V	S	I	S	L	S	T	S	R	L	K	Q	V	G	.	E	K	N	L	L	K	P	L	R	E
Query Conservation																																																																							.
Alig confidence																																																																							.
Template Conservation
Template Sequence		I	Q	R	L	T	E	R	T	I	T	A	R	D	E	L	K	A	A	I	L	A	V	R	A	D	G	I	C	V	L	D	Q	E	L	E	A	G	L	R	S	X	A	A	P	I	R	G	A	S	G	L	T	V	A	A	V	N	I	S	T	P	A	A	R	Y	S	L	E	D	L	H	S	D	L	I	P	S	L	R	V
Template Known Secondary structure						S	T	T	S																		S						S	S	S	S	T	T											T	T	S	S											G	G	G	S								T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		262	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	Q	A	I	S	N	E	L	G	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	T	D	I	E	Q	D	L	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions