 |
Job Description | P37692 | Confidence | 29.37% | Date | Thu Jan 5 11:57:14 GMT 2012 |
Rank | 178 | Aligned Residues | 80 |
% Identity | 15% | Template | c3ezyB_ |
PDB info |
PDB header:structural genomics, unknown function | Chain: B: PDB Molecule:dehydrogenase; |
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
|
Resolution | 2.04 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
|
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . | . |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | I | L | V | I | G | P | S | W | V | G | D | M | M | M | S | Q | S | L | Y | R | T | L | Q | A | R | Y | P | Q | A | I | I | D | V | M | A | P | . |
. |
A | W | C | R | P | L | L | S | R | M | P | E | V | N | E | A | I | P | M | P | L | G | H | G | A | L | E | I | G | E | R | R | K | L | G | H | S | L | R | E |
Query Conservation |   |
|
|
|
|
|
|   |   |   |   |
|
|
|   |
|   |   |   |
|   |
|   |   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |   | . | . |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|   |
|   |   |
|   | . | . | . | . | . |   |
|   |   |   |
|   |   | . |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|
|   |   |
Template Sequence |   |
L | R | I | G | V | I | G | L | G | R | I | G | T | . |
. |
. |
. |
. |
I | H | A | E | N | L | K | M | . |
I | D | D | A | I | L | Y | A | I | S | D | V | R | E | D | R | L | R | E | M | K | E | K | L | G | V | E | K | A | Y | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | P | H | E | L | I | E | D |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  | . | . | . | . | . |  |  |  |  |  | G | G | G | . |
| T | T |
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | |
|
|
|
|
. | . | . | . | . | . | 20 | . | |
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | R | Y | D | R | A | Y | V | L | P | N | S | F | K | S | A | L | V | P | F | F | A |
Query Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
|
Template Sequence |   |
P | N | V | D | A | V | L | V | C | S | S | T | N | T | H | S | E | L | V | I | A | C |
Template Known Secondary structure |   |
T | T |
|
|  |  |  |  |
| S |
| G | G | G |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
61 | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|