 |
Job Description | P37692 | Confidence | 37.67% | Date | Thu Jan 5 11:57:14 GMT 2012 |
Rank | 150 | Aligned Residues | 91 |
% Identity | 11% | Template | c2q5cA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:ntrc family transcriptional regulator; |
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
|
Resolution | 1.49 Å |
|
 |
  |   |
198 | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | H | Y | H | Y | A | E | L | A | K | Q | L | I | D | E | G | Y | Q | V | V | L | F | G | S | A | K | D | H | E | A | G | N | E | I | L | A | A | L | N | T | E | Q | Q | A | W | C | R | N | L | A | G | E | T | Q | L | D | Q | A | V | I | L | I | A | A | C | K | A | I | V | T | N | D | S | G | L | M | H | V | A | A |
Query Conservation |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |   |   |
|
|   |   |   |
|
|   |
|   |   |
|
|
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|
|   | . |   |   |   |   |   |   |
|   |
Template Sequence |   |
T | R | F | D | T | M | R | A | V | Y | N | A | K | R | F | G | N | E | L | A | L | I | A | Y | K | H | S | I | V | D | K | H | E | I | E | A | M | L | G | V | K | I | K | E | F | L | F | S | S | E | D | E | I | T | T | L | I | S | K | V | K | T | E | N | I | K | I | V | V | S | G | . |
K | T | V | T | D | E | A | I |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |
| S |  |  |  |  |  |  |  | S | S |
| S | S |
|  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |
| S | G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |
| . |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | . | . | . |
  |
  |   |
278 | . | 280 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | N | R | P | L | V | A | L | Y | G | P |
Query Conservation |   |
|   |
|   |
|   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|
|
|   |
|
|
Template Sequence |   |
K | Q | G | L | Y | G | E | T | I | N | S | G |
Template Known Secondary structure |   |
 | T | T |
|  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|