Job Description P37692 Confidence 30.44% Date Thu Jan 5 11:57:14 GMT 2012 Rank 170 Aligned Residues 77 % Identity 21% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		K	I	L	V	I	G	P	S	W	V	G	D	M	M	M	S	Q	S	L	Y	R	T	L	Q	A	R	Y	P	Q	A	I	I	D	V	M	.	A	P	A	W	C	R	P	L	L	S	R	M	P	E	V	N	E	A	I	P	M	P	L	G	H	G	A	L	E	I	G	E	R	R	K	L	G	H	S	L	R	E	K	R
Query Conservation																																					.
Alig confidence													.	.	.	.	.	.	.																		.																				.
Template Conservation													.	.	.	.	.	.	.																																						.
Template Sequence		K	V	L	V	I	G	G	G	D	G	G	.	.	.	.	.	.	.	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	.	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	G	S
Template Known Secondary structure							S		S	S	S		.	.	.	.	.	.	.						T	T		T	T																						T	T	T	G	G	G	.	T	T		T	T						S								S	S		S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.																																						.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		81	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	R	A	Y	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	A	V	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		195	.	.	.	.	200

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions