Job Description P27245 Confidence 98.97% Date Thu Jan 5 11:43:25 GMT 2012 Rank 64 Aligned Residues 105 % Identity 16% Template d1sd4a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Penicillinase repressor Resolution 2.00

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.
Predicted Secondary structure																																.	.	.	.																																						.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.																																						.	.	.	.	.	.	.	.
Query Sequence		P	L	D	I	T	A	A	Q	F	K	V	L	C	S	I	R	C	A	A	C	I	T	P	V	E	L	K	K	V	L	.	.	.	.	S	V	D	L	G	A	L	T	R	M	L	D	R	L	V	C	K	G	W	V	E	R	L	P	N	P	N	D	K	R	G	V	L	V	K	L	T	.	.	.	.	.	.	.	.	T
Query Conservation																																.	.	.	.																																						.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.																										.	.	.										.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.
Template Sequence		Q	V	E	I	S	X	A	E	W	D	V	X	N	I	I	W	D	K	K	S	V	S	A	N	E	I	V	V	E	I	Q	K	Y	K	E	V	S	D	K	T	I	R	T	L	I	T	R	L	Y	K	K	E	I	I	K	R	Y	K	S	.	.	.	E	N	I	Y	F	Y	S	S	N	I	K	E	D	D	I	K	X	K
Template Known Secondary structure																			S	S	S												T	T	S																	T	T	S							.	.	.	T	T								S
Template Predicted Secondary structure																																																													.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		G	G	A	A	I	C	E	Q	C	H	Q	L	V	G	Q	D	L	H	Q	E	L	T	K	N	.	.	L	T	A	D	E	V	A	T	L	E	Y	L	L	K	K	V
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		T	A	K	T	F	L	N	K	L	Y	G	G	D	X	K	S	L	V	L	N	F	A	K	N	E	E	L	N	N	K	E	I	E	E	L	R	D	I	L	N	D	I
Template Known Secondary structure												T	T												T	T		S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions