Job Description P27245 Confidence 76.33% Date Thu Jan 5 11:43:25 GMT 2012 Rank 404 Aligned Residues 60 % Identity 12% Template d1rp3a2 SCOP info DNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	M	V	N	Q	K	K	D	R	L	L	N	E	Y	L	S	P	L	D	I	T	A	A	Q	F	K	V	L	C	S	I	R	C	A	A	C	I	T	P	V	E	L	K	K	V	L	S	V	D	L	G	A	L	T	R	M	L	D	R	L	V	C	K
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		E	V	I	K	R	E	L	T	E	K	V	K	E	A	V	S	K	L	.	.	.	P	E	R	E	K	L	V	I	Q	L	I	F	Y	E	E	L	P	A	K	E	V	A	K	I	L	E	T	S	V	S	R	V	S	Q	L	K	A	K	A	L	E	R
Template Known Secondary structure																	T	T	S	.	.	.													T	S											T	T	S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions