Job Description P60566 Confidence 66.08% Date Thu Jan 5 12:06:54 GMT 2012 Rank 46 Aligned Residues 134 % Identity 12% Template c2c4kD_ PDB info PDB header:regulatory protein Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase- PDBTitle: crystal structure of human phosphoribosylpyrophosphate2 synthetase-associated protein 39 (pap39) Resolution 2.65 Å

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		5	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.														.	.	.	.	.	.	.
Predicted Secondary structure												.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	C	Y	K	C	V	P	D	E	Q	.	D	I	A	V	N	N	A	D	G	S	L	D	F	S	K	A	D	A	K	I	S	Q	Y	D	L	N	A	I	E	A	A	C	Q	L	K	Q	.	.	Q	A	A	E	A	Q	V	T	A	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	G	K	A	L	T
Query Conservation												.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																																					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	V	Y	Q	E	T	N	G	E	T	R	V	E	I	K	E	S	V	R	G	Q	D	I	F	I	I	Q	T	I	P	R	D	V	N	T	A	V	M	E	L	L	I	M	A	Y	A	L	K	T	A	C	A	R	N	I	I	G	V	I	P	Y	F	P	Y	S	K	Q	S	K	M	R	K	R	G	S	I	V	C	K
Template Known Secondary structure								T	T	S								S			T	T											S																			T	T		S							S	S		T	T	T	T	T	T	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.																						.	.	.
Query SS confidence																										.	.	.	.	.	.	.																						.	.	.
Query Sequence		N	A	K	G	R	K	D	V	L	S	R	G	P	D	E	L	I	V	V	I	D	D	Q	F	.	.	.	.	.	.	.	E	Q	A	L	P	Q	Q	T	A	S	A	L	A	A	A	A	Q	K	A	G	F	.	.	.	D	L	I	L	C	G	D	G	S	S	D	L	Y	A	Q	Q	V	G	L	L	V	G	E	I	L
Query Conservation																										.	.	.	.	.	.	.																						.	.	.
Alig confidence				.	.																					.	.	.	.	.	.	.																						.	.	.						.	.	.
Template Conservation				.	.																																																									.	.	.
Template Sequence		L	L	.	.	A	S	M	L	A	K	A	G	L	T	H	I	I	T	M	D	L	H	Q	K	E	I	Q	G	F	F	S	F	P	V	D	N	L	R	A	S	P	F	L	L	Q	Y	I	Q	E	E	I	P	N	Y	R	N	A	V	I	V	.	.	.	A	K	S	P	D	A	A	K	R	A	Q	S	Y	A	E	R	L
Template Known Secondary structure				.	.							T									S		S	S	G	G	G	G	G	S		S	S																			S	T	T	G	G	G					.	.	.		S	S	G	G	G
Template Predicted Secondary structure				.	.																																																									.	.	.
Template SS confidence
		117	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		139	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	P	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	L	A
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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