Return to main results Retrieve Phyre Job Id

Job DescriptionP60566
Confidence75.11%DateThu Jan 5 12:06:54 GMT 2012
Rank30Aligned Residues67
% Identity22%Templatec1zq1B_
PDB info PDB header:lyaseChain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90......... 100.........110.........120. ........130.........140.
Predicted Secondary structure 











.






......









Query SS confidence 





























.





















. . . . . .



















Query Sequence  AKGRKDVLSRGPDELIVVIDDQFEQALPQQ. TASALAAAAQKAGFDLILCGDG. . . . . . SSDLYAQQVGLLVGEILNIP
Query Conservation     

 


 


  
 
 
      
   . 
  

  
     



 
  ......
 
   
 
   

  

 
Alig confidence 












.




....






.





















......



















Template Conservation 
  
        
.




....









 


  
    










     


  

  

  
 
  
Template Sequence  AHEVAKALNSGDY. GVVVA. . . . HGTDTXGYTAAALSFXLRNLGKPVVLVGAQRSSDRPSSDAAXNLICSVRXATSEVA
Template Known Secondary structure  T
S.....

TTTSBT

S


SS
TTSTT
STSSB
Template Predicted Secondary structure 





.....


























Template SS confidence 














































































   158.160.........170 ..... ....180.........190.........200.........210.........220.........230.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions