Job Description P60566 Confidence 70.73% Date Thu Jan 5 12:06:54 GMT 2012 Rank 40 Aligned Residues 136 % Identity 17% Template c1u9yD_ PDB info PDB header:transferase Chain: D: PDB Molecule:ribose-phosphate pyrophosphokinase; PDBTitle: crystal structure of phosphoribosyl diphosphate synthase2 from methanocaldococcus jannaschii Resolution 2.65 Å

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		5	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.												.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure												.																									.																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																									.																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	C	Y	K	C	V	P	D	E	Q	.	D	I	A	V	N	N	A	D	G	S	L	D	F	S	K	A	D	A	K	I	S	Q	Y	D	.	L	N	A	I	E	A	A	C	Q	L	K	Q	Q	A	A	E	A	Q	V	T	A	L	S	.	.	.	.	.	.	.	.	.	.	.	V	G	G	K	A	L	T	N	A	K
Query Conservation												.																									.																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																									.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	Y	K	R	F	P	D	N	E	I	Y	V	R	I	V	D	E	I	N	D	D	E	A	V	I	I	N	T	Q	K	N	Q	N	D	A	I	V	E	T	I	L	L	C	D	A	L	R	D	E	G	V	K	K	I	T	L	V	A	P	Y	L	A	Y	A	R	Q	D	K	K	F	N	P	G	E	A	I	S	I	R
Template Known Secondary structure								T	T									S				S	S									S	S																	T	T	T									S	S		T	T		S		S	S		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		G	R	K	D	V	L	S	R	G	P	D	E	L	I	V	V	I	D	D	Q	F	.	.	.	.	.	.	.	E	Q	A	L	P	Q	Q	T	A	S	A	L	A	A	A	A	Q	K	A	G	F	D	L	I	L	C	G	D	G	S	S	D	L	Y	A	Q	Q	V	G	L	L	V	G	E	I	L	N	I	P	A	V
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																											.	.	.
Template Conservation																																																								.	.	.
Template Sequence		A	L	A	K	I	Y	S	N	I	V	D	K	L	I	T	I	N	P	H	E	T	H	I	K	D	F	F	T	I	P	F	I	Y	G	D	A	V	P	K	L	A	E	Y	V	K	D	K	L	N	D	P	I	V	L	.	.	.	A	P	D	K	G	A	L	E	F	A	K	T	A	S	K	I	L	N	A	E	Y	D
Template Known Secondary structure												S						S		S		G	G	G	G	G	G		S	S																T	T	T		S	S					.	.	.		S	S	G	G	G												T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions