Job Description P08142 Confidence 97.00% Date Thu Jan 5 11:00:40 GMT 2012 Rank 106 Aligned Residues 239 % Identity 13% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

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		12	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure														.	.	.											.	.	.	.	.																	.
Query SS confidence														.	.	.											.	.	.	.	.																	.
Query Sequence		R	F	T	G	A	E	F	I	V	H	F	L	.	.	.	E	Q	Q	G	I	K	I	V	T	G	.	.	.	.	.	I	P	G	G	S	I	L	P	V	Y	D	A	L	S	Q	S	.	T	Q	I	R	H	I	L	A	R	H	E	Q	G	A	G	F	I	A	Q	G	M	A	R	T	D	G	K	P	A	V	C	M	A
Query Conservation														.	.	.											.	.	.	.	.																	.
Alig confidence														.	.	.											.	.	.	.	.																	.																									.
Template Conservation																																																																									.
Template Sequence		Q	M	T	M	V	Q	A	I	T	D	A	L	R	I	E	L	K	N	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	Q	A	E	F	G	E	D	R	V	F	D	T	P	L	A	E	S	G	I	G	G	L	A	I	G	L	A	L	Q	.	G	F	R	P	V	P	E	I
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	.	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																				.	.	.	.	.	.	.	.	.																																			.
Query Sequence		C	S	G	P	G	A	T	N	L	V	T	A	I	A	D	A	R	L	.	.	.	.	.	.	.	.	.	D	S	I	P	L	I	C	I	T	G	Q	V	P	A	S	M	I	G	T	D	A	F	Q	E	V	D	T	Y	G	I	S	I	P	I	.	T	K	H	N	Y	L	V	R	H	I	E	E	L	P	Q	V	M	S
Query Conservation																				.	.	.	.	.	.	.	.	.																																			.
Alig confidence																				.	.	.	.	.	.	.	.	.														.	.																				.
Template Conservation																																										.	.
Template Sequence		Q	F	F	G	F	V	Y	E	V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	.	.	G	V	H	T	P	E	L	H	S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L	L	I
Template Known Secondary structure		S	S	G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	S	S				T	T	S	S								T	T	S	T	T								S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	F	R	I	A	Q	S	G	R	P	G	P	V	W	I	D	I	P	K	D	V	Q	T	A	V	F	E	I	E	T	Q	P	A	M	A	E	K	A	A	A	P	A	F	S	E	E	S	I	R	D	A	A	A	M	I	N	A	A	K	R	P	V	L	Y	L	G	G	G	V	I	N	A	P	A	R	V	R	E	L
Query Conservation
Alig confidence							.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	R	D	.	.	.	.	.	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	.	.	.	.	.	.	.	.	.	.	.	I	K	R	E	G	K	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A	A	E
Template Known Secondary structure						S	.	.	.	.	.	S	S								T	T	T	T	T	S							S	S						T	T				.	.	.	.	.	.	.	.	.	.	.						S	S							T	T
Template Predicted Secondary structure							.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.												.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	A	Q	L	P	T	T	M	T	L	M	A	L	G	M	L	P	K	A	H	P	L	S	L	G	M	L	G	M	H	G	V	R	S	T	N	Y	I	L	Q	E	A	D	L	L	I	V	L
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	K	E	G	I	S	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	L	R	T	V	Q	P	L	D	I	E	T	I	I	G	S	V	E	K	T	G	R	A	I	V	V
Template Known Secondary structure				T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.				S				S														S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.														.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions