Return to main results Retrieve Phyre Job Id

Job DescriptionP08142
Confidence26.88%DateThu Jan 5 11:00:40 GMT 2012
Rank187Aligned Residues109
% Identity24%Templatec2fugC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   195....200.........210.........220.........230.........240...... ...250.........260...
Predicted Secondary structure 

















.........
















..
Query SS confidence 



















































. . . . . . . . .
















. .
Query Sequence  AFSEESIRDAAAMINAAKRPVLYLGGGVINAPARVRELAEKAQLPTTMTLMA. . . . . . . . . LGMLPKAHPLSLGMLGM. .
Query Conservation               
  






 
 
       
  


 

 

  
   .........
       
   
  
 ..
Alig confidence 



















































.........
















..
Template Conservation      
 
   
  
  
    
  
 
      
         
  
       
  
    
 

            
 
Template Sequence  KEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALY
Template Known Secondary structure  S



SS

SGGG




SSTTTTT
S

SSS

SS



SS
Template Predicted Secondary structure 





































Template SS confidence 















































































   484.....490.........500.........510.........520.........530.........540.........550.........560...
 
   264.....270.........280.........290.........300...
Predicted Secondary structure  ..
























Query SS confidence  . .







































Query Sequence  . . HGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKI
Query Conservation  ..         
   
 

 

                    
Alig confidence  ..







































Template Conservation   
        

 

 



 
   
 

   






   
Template Sequence  AYYGFVPPEEALKGKRFVVMHLSHLHPLAERYAHVVLPAPTF
Template Known Secondary structure  SS


TT
S


SS

TT
S




G
Template Predicted Secondary structure 


















Template SS confidence 









































   566...570.........580.........590.........600.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions