Job Description P08142 Confidence 99.89% Date Thu Jan 5 11:00:40 GMT 2012 Rank 58 Aligned Residues 498 % Identity 10% Template c2c3yA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase; PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus Resolution 1.93 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.											50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	K	R	F	T	G	A	E	F	I	V	H	F	L	E	Q	Q	G	I	K	I	V	T	G	I	P	G	G	S	I	L	P	V	Y	D	A	L	S	Q	S	.	.	.	.	.	.	.	.	.	.	T	Q	I	R	H	I	L	A	R	H	E	Q	G	A	G	F	I	A	Q	G	M	A	R	T	D	G	K	P	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																									.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation																		.																																																														.	.
Template Sequence		K	M	M	T	T	D	G	N	T	A	T	A	H	V	A	Y	.	A	M	S	E	V	A	A	I	Y	P	I	T	P	S	S	T	M	G	E	E	A	D	D	W	A	A	Q	G	R	K	N	I	F	G	Q	T	L	T	I	R	E	M	Q	S	E	A	G	A	A	G	A	V	H	G	A	L	A	A	G	A	L	.	.
Template Known Secondary structure																		.				S								T	T	T														T				T	T	S									S	S														T	T			.	.
Template Predicted Secondary structure																		.																																																														.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	M	A	C	S	G	P	G	A	T	N	L	V	T	A	I	A	D	A	R	L	D	S	I	P	L	I	C	I	T	G	Q	V	P	A	S	M	I	G	T	D	A	F	Q	E	V	D	T	Y	G	I	S	I	P	I	T	K	H	N	Y	L	V	R	H	I	E	E	L	P	Q	V	M	S	D	A	F	R	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	T	F	T	A	S	Q	G	L	L	L	M	I	P	N	M	Y	K	I	S	G	E	L	L	P	G	V	F	H	V	T	A	R	A	I	A	A	H	A	L	S	I	F	G	D	H	Q	D	I	Y	A	A	R	Q	T	G	F	A	M	L	A	S	S	S	V	Q	E	A	H	D	M	A	L	V	A	H	L	A	A
Template Known Secondary structure																								T	T										B				S	S	S				S	B		S						T	T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		159	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure														.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	G	R	P	G	P	V	W	I	D	I	.	P	K	D	V	Q	T	A	V	F	E	I	E	T	Q	P	A	M	A	E	K	A	A	A	P	A	F	S	E	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation														.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.							.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		I	E	S	N	V	.	P	F	M	H	F	F	D	G	F	R	T	S	H	E	I	Q	K	I	E	V	L	D	Y	A	D	M	A	S	L	V	N	Q	K	A	L	A	E	F	R	A	K	S	M	N	P	E	H	P	H	V	R	G	T	A	Q	N	P	D	I	Y	F	Q	G	R	E	A	A	N	P	Y	Y	L	K	V
Template Known Secondary structure							.								T	T	T	T	T	S																	S												S			T	T	S					S					T	T	T							T	T
Template Predicted Secondary structure							.
Template SS confidence
		161	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
					201	.	.	.	.	.	.	.	.																210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure		.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	I	R	D	A	A	A	M	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	K	R	P	V	L	Y	L	G	G	G	V	I	N	A	P	A	R	V	R	E	L	A	E	K	A	Q	L	P	T	T	M	T	L	M	A	L	G	M	L	P	K	A	H	P	L	S	L	G	M	L	G
Query Conservation		.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	I	V	A	E	Y	M	Q	K	V	A	S	L	T	G	R	S	Y	K	L	F	D	Y	V	G	A	P	D	A	E	R	V	I	V	S	M	G	S	S	C	E	T	I	E	E	V	I	N	H	L	A	A	K	G	E	K	I	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	V	R	L	Y	R
Template Known Secondary structure																	S					S							T	T		S							T	T														T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.														300	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.													.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	H	G	V	R	S	T	N	Y	I	L	.	Q	E	A	D	L	L	I	V	L	G	A	R	F	D	D	R	A	I	G	.	.	.	.	.	.	.	.	.	.	.	.	K	T	E	Q	F	C	P	N	A	K	I	I	H	V	D	I	D	R	A	E	L	G	K	I	K	Q	P	H	V	A	I	Q	A	D	V	D	D
Query Conservation													.																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																				.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		P	F	V	S	E	A	F	F	A	A	L	P	A	S	A	K	V	I	T	V	L	D	R	T	K	E	P	G	A	P	G	D	P	L	Y	L	D	V	C	S	A	F	V	E	R	G	E	A	M	P	K	I	L	A	G	R	Y	G	L	G	S	K	E	F	S	P	.	.	.	.	.	.	.	.	.	A	M	V	K	S
Template Known Secondary structure		S									S	S		T	T									S	S			T	T		S	S															T	S												G	G	G						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.										.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370																	.	.	.	.	.	.	.	.	.	380	.	.	.									.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Query Sequence		V	L	A	Q	L	I	P	L	V	E	A	Q	P	R	A	E	W	H	Q	L	V	A	D	L	Q	R	E	F	P	C	P	I	P	K	A	C	D	P	L	S	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	L	I	N	A	V	A	A	C	V	D	D	.	.	.	.	.	.	.	.	N	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	D	N	M	S	G	A	K	K	N	H	F	T	V	G	I	E	D	D	V	T	G	T	S	L	P	V	D	N	A	F	A	D	T	T	P	K	G	T	I	Q	C	Q	F	W	G	L	G	A	D	G	T	V	G	A	N	K	Q	A	I	K	I	I	G	D	N	T	D	L	F	A	Q	G	Y	F	S	Y	D	S
Template Known Secondary structure								T	T			S	S				S	S			T	T	T			B					T	T					S		T	T										T	T	S	S																S	S											S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.				.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																																										.	.	.									.
Query SS confidence																																																										.	.	.									.
Query Sequence		I	I	T	T	D	V	G	Q	H	Q	M	W	T	A	Q	A	Y	P	L	N	R	P	R	Q	W	L	T	S	G	G	L	G	T	M	G	F	G	L	P	A	A	I	G	A	A	L	A	N	P	D	R	K	V	L	C	F	.	.	.	S	G	D	G	S	L	M	M	.	N	I	Q	E	M	A	T	A	S	E	N	Q
Query Conservation																																																										.	.	.									.
Alig confidence																		.																																								.	.	.									.
Template Conservation																		.
Template Sequence		K	K	S	G	G	I	T	I	S	H	L	R	F	G	E	K	.	P	I	Q	S	T	Y	L	V	N	R	A	D	Y	V	A	C	H	N	P	A	Y	V	G	I	Y	D	I	L	E	G	I	K	D	G	G	T	F	V	L	N	S	P	W	S	S	L	E	D	M	D	K	H	L	P	S	G	I	K	R	T	I	A	N
Template Known Secondary structure			S	S	S											S	S	.						S			S	S		S					S		G	G	G	G	G	T	S		T	T	T	T			T	T								S			S								S		T	T	T		.		T	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.										.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.			.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		L	D	V	K	I	I	L	M	N	N	E	A	L	G	L	V	H	Q	Q	Q	S	L	F	Y	E	Q	.	.	.	.	.	.	.	.	.	G	V	F	A	A	T	Y	P	G	K	I	N	F	M	Q	I	A	A	G	F	G	L	E	T	C	D	L	.	.	N	N	E	A	D	P	Q	A	S	L	Q	E	I	I	N	R
Query Conservation																												.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		K	K	L	K	F	Y	N	I	D	A	V	K	I	A	T	D	V	G	L	G	G	R	I	N	M	I	M	Q	T	A	F	F	K	L	A	G	V	L	P	F	E	K	A	V	D	L	L	K	K	S	I	H	K	A	Y	G	K	K	G	E	K	I	V	K	M	N	T	D	A	V	D	Q	A	V	T	S	L	Q	E	F
Template Known Secondary structure		T	T																T	S	T	T														S		S	S																S			S	S							.														B
Template Predicted Secondary structure
Template SS confidence
		537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
		531	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		617	.	.