Job Description P08142 Confidence 97.85% Date Thu Jan 5 11:00:40 GMT 2012 Rank 90 Aligned Residues 250 % Identity 12% Template c2bp7F_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit; PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1) Resolution 2.9 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.				.	.	.	.	.	.	30	.	.	.						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.											.	.	.	.	.																	.
Query SS confidence																	.	.	.											.	.	.	.	.																	.
Query Sequence		T	R	K	R	F	T	G	A	E	F	I	V	H	F	L	.	.	.	E	Q	Q	G	I	K	I	V	T	G	.	.	.	.	.	I	P	G	G	S	I	L	P	V	Y	D	A	L	S	Q	S	.	T	Q	I	R	H	I	L	A	R	H	E	Q	G	A	G	F	I	A	Q	G	M	A	R	T	D	G	K	P	A	V
Query Conservation																	.	.	.											.	.	.	.	.																	.
Alig confidence																	.	.	.											.	.	.	.	.																	.																													.
Template Conservation																																																																																.
Template Sequence		A	T	T	T	M	T	M	I	Q	A	L	R	S	A	M	D	V	M	L	E	R	D	D	N	V	V	V	Y	G	Q	D	V	G	Y	F	G	G	V	F	R	C	T	E	G	L	Q	T	K	Y	G	K	S	R	V	F	D	A	P	I	S	E	S	G	I	V	G	T	A	V	G	M	G	A	Y	G	L	R	P	.	V
Template Known Secondary structure																								T	T						T	T		S	S	S			T	T	S	T	T	T	T							T	T	T						S																T				.
Template Predicted Secondary structure																																																																																.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100										.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																							.	.	.	.	.	.	.	.	.																																			.
Query Sequence		C	M	A	C	S	G	P	G	A	T	N	L	V	T	A	I	A	D	A	R	L	.	.	.	.	.	.	.	.	.	D	S	I	P	L	I	C	I	T	G	Q	V	P	A	S	M	I	G	T	D	A	F	Q	E	V	D	T	Y	G	I	S	I	P	I	.	T	K	H	N	Y	L	V	R	H	I	E	E	L	P	Q
Query Conservation																							.	.	.	.	.	.	.	.	.																																			.
Alig confidence																							.	.	.	.	.	.	.	.	.															.	.																			.
Template Conservation																																														.	.
Template Sequence		V	E	I	Q	F	A	D	Y	F	Y	P	A	S	D	Q	I	V	S	E	M	A	R	L	R	Y	R	S	A	G	E	F	I	A	P	L	T	L	R	M	P	C	G	G	G	.	.	I	Y	G	G	Q	T	H	S	Q	S	P	E	A	M	F	T	Q	V	C	G	L	R	T	V	M	P	S	N	P	Y	D	A	K	G
Template Known Secondary structure					S		G	G	G		G	G	G						T	T	T	T	T					T	T	T	S	S													S	.	.	S	S			T	T	S	S				T					T	S	T	T								S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		V	M	S	D	A	F	R	I	A	Q	S	G	R	P	G	P	V	W	I	D	I	P	K	D	V	Q	T	A	V	F	E	I	E	T	Q	P	A	M	A	E	K	A	A	A	P	A	F	S	E	E	S	I	R	D	A	A	A	M	.	.	.	.	.	I	N	A	A	K	R	P	V	L	Y	L	G	G	G	V	I	N
Query Conservation																																																												.	.	.	.	.
Alig confidence										.	.	.	.	.																																														.	.	.	.	.														.	.	.
Template Conservation										.	.	.	.	.																																																																.	.	.
Template Sequence		L	L	I	A	S	I	E	C	.	.	.	.	.	D	D	P	V	I	F	L	E	P	K	R	L	Y	N	G	P	F	D	G	H	H	D	R	P	V	T	P	W	S	K	H	P	H	S	A	V	P	D	G	Y	Y	T	V	P	L	D	K	A	A	I	T	R	P	G	N	D	V	S	V	L	T	Y	G	.	.	.	T
Template Known Secondary structure										.	.	.	.	.	S	S								G	G	G	S	S	S				S		S	S	S					G	G	G	S	T	T					S	S						T	T									S	S							T	.	.	.	T
Template Predicted Secondary structure										.	.	.	.	.																																																																.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	R	V	R	E	L	A	E	K	A	Q	L	P	T	T	M	T	L	M	A	L	G	M	L	P	K	A	H	P	L	S	L	G	M	L	G	M	H	G	V	R	S	T	N	Y	I	L	Q	E	A	D	L	L	I	V	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	Y	V	A	Q	V	A	A	E	E	S	G	V	D	A	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	L	R	S	L	W	P	L	D	L	D	T	I	V	E	S	V	K	K	T	G	R	C	V	V	V
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.				S				S														S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.														.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions