Job Description P08142 Confidence 97.65% Date Thu Jan 5 11:00:40 GMT 2012 Rank 95 Aligned Residues 248 % Identity 10% Template c1ni4D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta PDBTitle: human pyruvate dehydrogenase Resolution 1.95 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																					.	.					.	.	.	.	.																.	.
Query SS confidence																					.	.					.	.	.	.	.																.	.
Query Sequence		R	F	T	G	A	E	F	I	V	H	F	L	E	Q	Q	G	I	K	I	.	.	V	T	G	I	.	.	.	.	.	P	G	G	S	I	L	P	V	Y	D	A	L	S	Q	S	.	.	T	Q	I	R	H	I	L	A	R	H	E	Q	G	A	G	F	I	A	Q	G	M	A	R	T	D	G	K	P	A	V	C	M	A
Query Conservation																					.	.					.	.	.	.	.																.	.
Alig confidence																					.	.					.	.	.	.	.																.	.																													.
Template Conservation																																																																													.
Template Sequence		Q	V	T	V	R	D	A	I	N	Q	G	X	D	E	E	L	E	R	D	E	K	V	F	L	L	G	E	E	V	A	Q	Y	D	G	A	Y	K	V	S	R	G	L	W	K	K	Y	G	D	K	R	I	I	D	T	P	I	S	E	X	G	F	A	G	I	A	V	G	A	A	X	A	G	L	R	P	.	I	C	E	F
Template Known Secondary structure																					T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T				.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100								.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																																			.
Query SS confidence																				.	.	.	.	.	.	.																																			.
Query Sequence		C	S	G	P	G	A	T	N	L	V	T	A	I	A	D	A	R	L	.	.	.	.	.	.	.	D	S	I	P	L	I	C	I	T	G	Q	V	P	A	S	M	I	G	T	D	A	F	Q	E	V	D	T	Y	G	I	S	I	P	I	.	T	K	H	N	Y	L	V	R	H	I	E	E	L	P	Q	V	M	S	D	A
Query Conservation																				.	.	.	.	.	.	.																																			.
Alig confidence																				.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		X	T	F	N	F	S	X	Q	A	I	D	Q	V	I	N	S	A	A	K	T	Y	Y	X	S	G	G	L	Q	P	V	P	I	V	F	R	G	P	N	G	A	S	A	G	V	A	A	Q	H	S	Q	C	F	A	A	W	Y	G	H	C	P	G	L	K	V	V	S	P	W	N	S	E	D	A	K	G	L	I	K	S	A
Template Known Secondary structure		S	S	G	G	G	G	G	G	T							T	T	T	T					T	T	S	S												S			S	S			G	G	G										T	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	I	A	Q	S	G	R	P	G	P	V	W	I	D	I	P	K	D	V	Q	T	A	V	F	E	I	E	T	Q	P	A	M	A	E	K	A	A	A	P	A	F	S	E	E	S	I	R	D	A	A	A	M	I	N	A	A	K	R	P	V	L	Y	L	G	G	G	V	I	N	A	P	A	R	V	R	E	L	A	E
Query Conservation
Alig confidence					.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence		I	R	D	.	.	.	.	.	N	N	P	V	V	V	L	E	N	E	L	X	Y	G	V	P	F	E	F	P	P	E	A	Q	S	K	D	F	L	I	P	I	G	K	A	K	.	.	.	.	.	.	.	.	I	E	R	Q	G	T	H	I	T	V	V	S	H	S	R	P	V	G	H	C	L	E	A	A	A	V	L	S
Template Known Secondary structure				S	.	.	.	.	.	S	S								T	T	T	T	T											S	T	T					T	T				.	.	.	.	.	.	.	.						S	S							S	T
Template Predicted Secondary structure					.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.									200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	Q	L	P	T	T	M	T	L	M	A	L	G	M	L	P	K	A	H	P	L	S	L	G	M	L	G	M	H	G	V	R	S	T	N	Y	I	L	Q	E	A	D	L	L	I	V	L	G	A	R	F
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	E	G	V	E	C	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	X	R	T	I	R	P	X	D	X	E	T	I	E	A	S	V	X	K	T	N	H	L	V	T	V	E	G	G	W
Template Known Secondary structure			T	T						.	.	.	.	.	.	.	.	.	.	.	.	.								T														S							S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.														.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions