Job Description P0AEP1 Confidence 100.00% Date Thu Jan 5 11:23:49 GMT 2012 Rank 2 Aligned Residues 407 % Identity 15% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	T	F	F	V	C	F	L	A	A	L	A	G	L	L	F	G	L	D	I	G	V	I	A	G	A	L	P	F	I	A	D	E	F	Q	I	T	S	H	T	Q	E	W	V	V	S	S	M	M	F	G	A	A	V	G	A	V	G	S	G	W	L	S	F	K	L	G	R	K	K	S	L	M	I	G	A	I	L	F
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		R	S	Y	I	I	P	F	A	L	L	C	S	L	F	F	L	W	A	V	.	.	.	.	A	N	N	L	N	D	I	L	L	P	Q	F	Q	Q	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y
Template Known Secondary structure			T	T	T																.	.	.	.														T	T			T	T													T	T											S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		V	A	G	S	L	F	S	A	A	A	.	.	.	P	N	V	E	V	L	I	L	S	R	V	L	L	G	L	A	V	G	V	A	S	Y	T	A	P	L	Y	L	S	E	I	A	P	E	K	I	R	G	S	M	I	S	M	Y	Q	L	M	I	T	I	G	I	L	G	A	Y	L	S	D	T	A	F	S	Y	T	G	A
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I	I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V
Template Known Secondary structure							T							T	T																														S	S		G	G	G																										T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	W	M	L	G	V	I	I	I	P	A	I	L	L	L	I	G	V	F	F	L	P	D	S	P	R	W	F	A	A	K	R	R	F	V	D	A	E	R	V	L	L	R	L	R	D	T	S	A	E	A	K	R	E	L	D	E	I	R	E	S	L	Q	V	K	Q	S	G	W	A	L	F	K	E	N	S	N	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L	S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R
Template Known Secondary structure												S																	T	T																			S						T	T	T					S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	F	L	G	V	L	L	Q	V	M	Q	Q	F	T	G	M	N	V	I	M	Y	Y	A	P	K	I	F	E	L	A	G	Y	T	N	T	T	E	Q	M	W	G	T	V	I	V	G	L	T	N	V	L	A	T	F	I	A	I	G	L	V	D	R	W	G	R	K	P	T	L	T	L	G	F	L	V	M	A	A
Query Conservation
Alig confidence															.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		W	A	V	L	A	Q	F	C	Y	V	G	A	Q	.	.	.	.	T	A	C	W	S	Y	L	I	R	Y	A	V	E	E	I	P	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A
Template Known Secondary structure															.	.	.	.															S	T	T																															S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	G	V	L	G	T	M	M	H	I	G	I	H	S	P	S	A	Q	Y	F	A	I	A	M	L	L	M	F	I	V	G	F	A	M	S	A	G	P	L	I	W	V	L	C	S	E	I	Q	P	L	K	G	R	D	F	G	I	T	C	S	T	A	T	N	W	I	A	N	M	I	V	G	A	T	F	L	T	M	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																																								.	.
Template Sequence		L	C	L	I	S	A	F	.	.	.	.	.	.	.	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	D	T	K	Y	G	.	.	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	S																	T	T											S	S		G	G	G					.	.							G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																								.	.
Template SS confidence
		338	.	340	.	.	.	.											.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	G	N	A	N	T	F	W	V	Y	A	A	L	N	V	L	F	I	L	L	T	L	W	L	V	P	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	G	N	I	P	T	A	E	L	I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure					T	S	S	G	G	G	G															T	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.