Job Description P31441 Confidence 100.00% Date Thu Jan 5 11:47:32 GMT 2012 Rank 4 Aligned Residues 417 % Identity 19% Template c2ubpC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii Resolution 2.00 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.													.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	R	G	D	A	V	A	D	Y	I	I	D	N	V	S	I	L	D	L	I	N	G	G	E	I	S	G	P	I	V	I	K	G	R	Y	I	A	G	V	G	A	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	T	D	A	P	A	L	Q	R	I	D	A	R	G	A	T	A	V	P	G	F	I	D	A	H
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		Y	T	R	T	E	N	V	L	D	L	L	L	T	N	A	L	I	L	D	Y	T	G	.	.	I	Y	K	A	D	I	G	V	K	D	G	Y	I	V	G	I	G	K	G	G	N	P	D	I	M	D	G	V	T	P	N	M	I	V	G	T	A	T	E	V	I	A	A	E	G	K	I	V	T	A	G	G	I	D	T	H
Template Known Secondary structure				T	T	T	T	B		S											T	T		.	.										T	T									B		T	T	T		S	S			T	T		B			T	T							T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Query Sequence		L	H	I	E	S	S	M	M	T	P	V	T	F	E	T	A	T	L	P	R	G	L	T	T	V	I	C	.	.	.	.	.	.	.	D	P	H	E	I	V	N	V	M	G	E	A	G	F	A	W	F	A	R	C	A	E	Q	A	R	Q	N	Q	Y	L	Q	V	S	S	C	V	P	A	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.											.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		V	H	F	I	N	P	D	Q	V	D	V	A	.	.	.	.	.	L	A	N	G	I	T	T	L	F	G	G	G	T	G	P	A	E	G	S	K	A	T	T	V	T	P	G	P	W	N	I	E	K	M	L	K	S	T	E	G	L	P	I	N	V	G	I	L	G	K	G	H	G	S	S	I	A	P	I	M	E	Q	I
Template Known Secondary structure							T	T						.	.	.	.	.			T	T									S	S	S							S	S																T	T		S	S					B						S	S	S
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
					156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																																											.	.	.
Query SS confidence		.	.	.																																																																											.	.	.
Query Sequence		.	.	.	L	E	G	C	D	V	N	G	A	S	F	T	L	E	Q	M	L	A	W	R	D	H	P	Q	V	T	G	L	A	E	M	M	D	Y	P	G	V	I	S	G	Q	N	A	L	L	D	K	L	D	A	F	R	H	L	T	L	D	G	H	C	P	G	L	G	G	K	E	L	N	A	Y	I	T	A	.	.	.
Query Conservation		.	.	.																																																																											.	.	.
Alig confidence		.	.	.																																																																											.	.	.
Template Conservation
Template Sequence		D	A	G	A	A	G	L	I	H	E	D	W	G	A	T	P	A	S	I	D	R	S	L	T	V	A	D	E	A	D	V	Q	V	A	I	H	S	D	T	L	N	E	A	G	F	L	E	D	T	L	R	A	I	N	G	R	V	I	H	S	F	H	V	E	G	A	G	G	G	H	A	P	D	I	M	A	M	A	G	H
Template Known Secondary structure			T	T			B			B	G	G	G																		T		B				B			T	T		S	S											T	T						T	T	T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270											.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	G	I	E	N	C	H	E	S	Y	Q	L	E	E	G	R	R	K	L	Q	L	G	M	S	L	M	I	R	E	G	S	A	A	R	N	L	N	A	L	A	P	L	.	.	.	.	.	.	.	.	.	.	I	N	E	F	N	S	P	Q	C	M	L	C	T	D	D	R	N	P	W	E	I	A	H	E
Query Conservation		.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	N	V	L	P	S	S	T	N	P	T	R	P	F	T	V	N	T	I	D	E	H	L	D	M	L	M	V	C	H	H	L	K	Q	N	I	P	E	D	V	A	F	A	D	S	R	I	R	P	E	T	I	A	A	E	D	I	L	H	D	L	G	I	I	S	M	M	S	T	D	A	L	A	M	G	R	A	G	E	M
Template Known Secondary structure		T	T				B			S	T	T	S	S		B	T	T													T	T			T	T	S											S														T	T	S	S		B					B	T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.													310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																								.																.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.																								.																.
Query Sequence		G	H	I	D	A	L	I	R	R	L	I	E	Q	H	N	.	.	.	.	.	.	.	.	.	.	.	.	V	P	L	H	V	A	Y	R	V	A	S	W	S	T	A	R	H	F	G	L	N	H	L	.	G	L	L	A	P	G	K	Q	A	D	I	V	L	L	S	.	D	A	R	K	V	T	V	Q	Q	V	L	V	K
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																								.																.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																								.																.
Template Conservation
Template Sequence		V	L	R	T	W	Q	T	A	D	K	M	K	K	Q	R	G	P	L	A	E	E	K	N	G	S	D	N	F	R	L	K	R	Y	V	S	K	Y	T	I	N	P	A	I	A	Q	G	I	A	H	E	V	G	S	I	E	E	G	K	F	A	D	L	V	L	W	E	P	K	F	F	G	V	K	A	D	R	V	I	K	G
Template Known Secondary structure																		S		T	T			S	S														T								T		T	T	T	S	S	S			T	T	S	B								G	G	G	T	T	T	S		S					T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		361	.	.	.						.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.							.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure						.	.	.	.	.																						.	.	.	.	.	.																																						.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.																						.	.	.	.	.	.																																						.	.	.	.	.	.	.
Query Sequence		G	E	P	I	.	.	.	.	.	D	A	Q	T	L	Q	A	E	E	S	A	R	L	A	Q	S	A	P	P	Y	G	.	.	.	.	.	.	N	T	I	A	R	Q	P	V	S	A	S	D	F	A	L	Q	F	T	P	G	K	R	Y	R	V	I	D	V	I	H	N	E	L	I	T	H	S	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.																						.	.	.	.	.	.																																						.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.																						.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	I	A	Y	A	Q	I	G	D	P	S	A	S	I	P	T	P	Q	P	V	M	G	R	R	M	Y	G	T	V	G	D	L	I	H	D	T	N	I	T	F	M	S	K	S	S	I	Q	Q	G	V	P	A	K	L	G	L	K	R	R	I	G	T	V	K	N	C	R	N	I	G	K	K	D	M	K	W	N	D	V
Template Known Secondary structure		T										T	T	S	S	S	S		S	S								G	G	G	S	T	T					S												T	T						T			S							S		S	S			G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
				423	.	.	.	.	.	.	430	.	.									.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure		.	.											.	.	.	.	.	.	.	.
Query SS confidence		.	.											.	.	.	.	.	.	.	.
Query Sequence		.	.	H	S	S	V	Y	S	E	N	G	F	.	.	.	.	.	.	.	.	D	R	D	D	V	S	F	I	A	V	L	E	R	Y
Query Conservation		.	.											.	.	.	.	.	.	.	.
Alig confidence		.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	D	I	D	I	N	P	E	T	Y	E	V	K	V	D	G	E	V	L	T	C	E	P	V	K	E	L	P	M	A	Q	R	Y
Template Known Secondary structure									T	T	T						T	T								B	S			S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.