Job Description P31441 Confidence 100.00% Date Thu Jan 5 11:47:32 GMT 2012 Rank 50 Aligned Residues 329 % Identity 17% Template c2qs8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of a xaa-pro dipeptidase with bound2 methionine in the active site Resolution 2.33 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.																				.																																			.	.	.	.	.	.	.	.
Query SS confidence																			.																				.																																			.	.	.	.	.	.	.	.
Query Sequence		A	D	Y	I	I	D	N	V	S	I	L	D	L	I	N	G	G	.	E	I	S	G	P	I	V	I	K	G	R	Y	I	A	G	V	G	A	E	.	Y	T	D	A	P	A	L	Q	R	I	D	A	R	G	A	T	A	V	P	G	F	I	D	A	H	L	H	I	E	S	S	M	M	T	.	.	.	.	.	.	.	.
Query Conservation																			.																				.																																			.	.	.	.	.	.	.	.
Alig confidence																			.																				.																																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	T	L	I	H	A	G	K	L	I	D	G	K	S	D	Q	V	Q	S	R	I	S	I	V	I	D	G	N	I	I	S	D	I	K	K	G	F	I	S	S	N	D	F	E	D	Y	I	D	L	R	D	H	T	V	L	P	G	L	X	D	X	H	V	H	F	G	Q	E	Y	Q	S	K	A	Q	A	P	I	K	V
Template Known Secondary structure														S	S		S	S											T	T								S					T	T	S	S																					T	T						T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																							.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																																							.	.
Query Sequence		.	.	.	.	.	.	.	.	P	V	T	F	E	T	A	T	L	P	R	G	L	T	T	V	I	C	D	P	H	E	I	V	N	V	M	G	E	A	G	F	A	W	F	A	R	C	A	E	Q	A	R	Q	N	Q	Y	L	Q	V	S	S	C	V	P	A	L	E	G	C	D	V	N	G	A	S	F	T	L	E	.	.
Query Conservation		.	.	.	.	.	.	.	.																																																																							.	.
Alig confidence		.	.	.	.	.	.	.	.																										.	.	.																																											.	.
Template Conservation																																			.	.	.
Template Sequence		E	R	E	X	Q	A	I	L	A	T	Q	H	A	Y	V	T	F	K	S	G	F	T	T	V	R	Q	V	G	D	S	G	L	V	.	.	.	A	I	S	L	R	D	A	I	N	S	G	K	L	A	G	P	R	I	F	A	A	G	K	T	I	A	T	T	G	G	H	A	D	P	T	N	G	K	A	V	D	D	Y	D
Template Known Secondary structure																				T	T										S	S	S		.	.	.										T	T	S	S										S		B			T	T		T	T		T	T	T	T			G	G	G
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
																													170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	L	A	W	R	D	H	P	Q	V	T	G	L	A	E	M	M	D	Y	P	G	V	I	S	G	Q	N	A	L	L	D	K	L	D	A	F	R	H	L	T	L	D	G	H	C	P	G	L	G	G	K	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	P	V	P	E	Q	G	V	V	N	G	P	Y	E	V	Y	A	A	V	R	Q	R	Y	K	D	G	A	D	G	I	K	I	T	V	T	G	G	V	L	S	V	A	K	S	G	Q	N	P	Q	F	T	Q	E	E	V	D	A	V	V	S	A	A	K	D	Y	G	X	W	V	A	V	H	A	H	G	A	E	G	X	K
Template Known Secondary structure					G	G	G	T				S															T		S							B			S	S	S	S	S	S		S	S		B		S															T	T									S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.																								.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	A	Y	I	T	A	G	I	E	N	C	H	E	S	Y	Q	L	E	E	G	R	R	K	L	Q	L	G	M	S	L	M	I	R	E	G	S	A	A	R	N	L	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	P	L	I	N	E	F	N	S	P	Q	C
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	I	K	A	G	V	D	S	I	E	H	G	T	F	X	D	L	E	A	X	D	L	X	I	E	N	G	T	Y	Y	V	P	T	I	S	A	G	E	F	V	A	E	K	S	K	I	D	N	F	F	P	E	I	V	R	P	K	A	A	S	V	G	P	Q	I	S	D	T	F	R	K	A	Y	E	K	G	V	K	I
Template Known Secondary structure							T		S						T	T													T																	T	T	S	T	T	S	S		T	T	T																						T			B
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.							.
Predicted Secondary structure																																																							.																				.	.	.	.	.	.
Query SS confidence																																																							.																				.	.	.	.	.	.
Query Sequence		M	L	C	T	D	D	R	N	P	W	E	I	A	H	E	G	H	I	D	A	L	I	R	R	L	I	E	Q	H	N	V	P	L	H	V	A	Y	R	V	A	S	W	S	T	A	R	H	F	G	L	N	H	L	.	G	L	L	A	P	G	K	Q	A	D	I	V	L	L	S	D	A	R	K	.	.	.	.	.	.	V
Query Conservation																																																							.																				.	.	.	.	.	.
Alig confidence												.	.	.	.																.																								.																				.	.	.	.	.	.
Template Conservation												.	.	.	.																.
Template Sequence		A	F	G	T	D	A	G	V	Q	K	.	.	.	.	H	G	T	N	W	K	E	F	V	Y	X	V	E	N	G	.	X	P	A	X	K	A	I	Q	S	A	T	X	E	T	A	K	L	L	R	I	E	D	K	L	G	S	I	E	S	G	K	L	A	D	L	I	A	V	K	G	N	P	I	E	D	I	S	V	L	E
Template Known Secondary structure							B	T	T	B		.	.	.	.	T	T		T	T									T	T	.										T	T							T	T		T	T	T	S	S	S			T	T	S	B							S	S		T	T	T		G	G	G	G	G
Template Predicted Secondary structure												.	.	.	.																.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Q	Q	V	L	V	K	G	E	P	I	D	A	Q
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		N	V	D	V	V	I	K	D	G	L	.	L	Y	E	G
Template Known Secondary structure		G							T	T		.
Template Predicted Secondary structure												.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.		.	410	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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