Job Description P31441 Confidence 100.00% Date Thu Jan 5 11:47:32 GMT 2012 Rank 39 Aligned Residues 324 % Identity 17% Template c1p1mA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein tm0936; PDBTitle: structure of thermotoga maritima amidohydrolase tm09362 bound to ni and methionine Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	I	D	N	V	S	I	L	D	L	I	N	G	G	E	I	S	G	P	I	V	I	K	G	R	Y	I	A	G	V	G	A	E	Y	T	D	A	P	A	L	Q	R	I	D	A	R	G	A	T	A	V	P	G	F	I	D	A	H	L	H	I	E	S	S	M	M	T	P	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		M	I	I	G	N	C	L	I	L	K	D	F	S	S	E	P	F	W	G	A	V	E	I	E	N	G	T	I	K	R	V	L	Q	.	.	.	.	G	E	V	K	V	D	L	D	L	S	G	K	L	V	M	P	A	L	F	N	T	H	T	H	A	P	M	T	L	L	R	G	V	A	E	D	L	S	F	E	E	W	L
Template Known Secondary structure												S	T	T	S											T	T								.	.	.	.	S	S				S				T	T														G	G	G	G	G	G	T	T	S	S		S
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
																						101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	F	E	T	A	T	L	P	R	G	L	T	T	V	I	C	D	P	H	E	I	V	N	V	M	G	E	A	G	F	A	W	F	A	R	C	A	E	Q	A	R	Q	N	Q	Y	L	Q	V	S	S	C	V	P	A	L	E	G	C	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		F	S	K	V	L	P	I	E	D	R	L	T	E	K	M	A	Y	Y	G	T	I	L	A	Q	M	E	M	A	R	H	G	I	A	G	F	V	D	M	Y	F	H	E	.	.	.	.	.	.	.	.	.	E	W	I	A	K	A	V	R	D	F	G	M	R	A	L	L	T	R	G	L	V	D	S	N	G	.	.	D	D
Template Known Secondary structure			T	T						T	T																			T	T	T									S	S		.	.	.	.	.	.	.	.	.																							B	T	T	.	.	B
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230									.
Predicted Secondary structure																																							.																																		.	.	.	.	.	.	.	.
Query SS confidence																																							.																																		.	.	.	.	.	.	.	.
Query Sequence		V	N	G	A	S	F	T	L	E	Q	M	L	A	W	R	D	H	P	Q	V	T	G	L	A	E	M	M	D	Y	P	G	V	I	S	G	Q	N	.	A	L	L	D	K	L	D	A	F	R	H	L	T	L	D	G	H	C	P	G	L	G	G	K	E	L	N	A	Y	I	T	A	G	.	.	.	.	.	.	.	.	I
Query Conservation																																							.																																		.	.	.	.	.	.	.	.
Alig confidence																																							.																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	R	L	E	E	N	L	K	L	Y	N	E	W	N	G	F	E	G	R	I	F	V	G	F	G	P	H	S	P	Y	L	C	S	E	E	Y	L	K	R	V	F	D	T	A	K	S	L	N	A	P	V	T	I	H	L	Y	E	T	S	K	E	E	Y	D	L	E	D	I	L	N	I	G	L	K	E	V	K	T	I
Template Known Secondary structure		T	T													T	T	G	G	G	T										T	T	T	S															T	T								S		S	T	T					T					T	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																												.															.	.	.
Query SS confidence																																												.															.	.	.
Query Sequence		E	N	C	H	E	S	Y	Q	L	E	E	G	R	R	K	L	Q	L	G	M	S	L	M	I	R	E	G	S	A	A	R	N	L	N	A	L	A	P	L	I	N	E	.	F	N	S	P	Q	C	M	L	C	T	D	D	R	N	.	.	.	P	W	E	I	A	H	E	G	H	I	D	A	L	I	R	R	L	I	E	Q
Query Conservation																																												.															.	.	.
Alig confidence																																												.															.	.	.
Template Conservation
Template Sequence		A	A	H	C	V	H	L	P	E	R	Y	F	G	V	L	K	D	I	P	F	F	V	S	H	N	P	A	S	N	L	K	L	G	N	G	I	A	P	V	Q	R	M	I	E	H	G	M	K	V	T	L	G	T	D	G	A	A	S	N	N	S	L	N	L	F	F	E	M	R	L	A	S	L	L	Q	K	A	Q	N	P
Template Known Secondary structure						T	T			G	G	G	T	T	T	T	T	T	S	S													T	T												T	T										T	T	T	T	S																	T	T		T
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.																		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	V	P	L	H	V	A	Y	R	V	A	S	W	S	T	A	R	H	F	G	L	N	H	L	G	L	L	A	P	G	K	Q	A	D	I	V	L	L	S	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	V	T	V	Q	Q	V	L	V	K	G	E	P	I	D	A	Q	T	L	Q
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		R	N	L	D	V	N	T	C	L	K	M	V	T	Y	D	G	A	Q	A	M	G	F	K	S	.	G	K	I	E	E	G	W	N	A	D	L	V	V	I	D	L	D	L	P	E	M	F	P	V	Q	N	I	K	N	H	L	V	H	A	F	S	G	E	V	F	A	T	M	V	A	G	K	W	I	Y	F	D	G	E	Y
Template Known Secondary structure		T	S	S										T								T		S		.	S	S			T	T	S	B										S	G	G	G		S	G	G	G								T			S			S					T	T						T	T	B
Template Predicted Secondary structure																										.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		371
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		385

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions