Job Description P31441 Confidence 100.00% Date Thu Jan 5 11:47:32 GMT 2012 Rank 25 Aligned Residues 334 % Identity 19% Template c1e9yB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:urease subunit beta; PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.													.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	G	D	A	V	A	D	Y	I	I	D	N	V	S	I	L	D	L	I	N	G	G	E	I	S	G	P	I	V	I	K	G	R	Y	I	A	G	V	G	A	E	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	D	A	P	A	L	Q	R	I	D	A	R	G	A	T	A	V	P	G	F	I	D	A	H	L
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		N	P	S	K	E	E	L	D	L	I	I	T	N	A	L	I	V	D	Y	T	G	.	.	I	Y	K	A	D	I	G	I	K	D	G	K	I	A	G	I	G	K	G	G	N	K	D	M	Q	D	G	V	K	N	N	L	S	V	G	P	A	T	E	A	L	A	G	E	G	L	I	V	T	A	G	G	I	D	T	H	I
Template Known Secondary structure		S			T	T			S											T	T		.	.										T	T									B		T	T	T	S	S	S			G	G	G	B			T	T							T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.								.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query Sequence		H	I	E	S	S	M	M	T	P	V	T	F	E	T	A	T	L	P	R	G	L	T	T	V	I	C	.	.	.	.	.	.	.	D	P	H	E	I	V	N	V	M	G	E	A	G	F	A	W	F	A	R	C	A	E	Q	A	R	Q	N	Q	Y	L	Q	V	S	S	C	V	P	A	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.															.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.
Template Sequence		H	F	I	S	P	Q	Q	.	.	.	.	.	I	P	T	A	F	A	S	G	V	T	T	M	I	G	G	G	T	G	P	A	D	G	T	N	A	T	T	I	T	P	G	R	R	N	L	K	W	M	L	R	A	A	E	E	Y	S	M	N	L	G	F	L	A	K	G	N	A	S	N	D	A	S	L	A	D	Q	I	E
Template Known Secondary structure			T	T		T	T		.	.	.	.	.							T	T										S	S																								T	T	S	S	S					B						S
Template Predicted Secondary structure									.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
				156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																																											.	.	.	.
Query SS confidence		.	.																																																																											.	.	.	.
Query Sequence		.	.	L	E	G	C	D	V	N	G	A	S	F	T	L	E	Q	M	L	A	W	R	D	H	P	Q	V	T	G	L	A	E	M	M	D	Y	P	G	V	I	S	G	Q	N	A	L	L	D	K	L	D	A	F	R	H	L	T	L	D	G	H	C	P	G	L	G	G	K	E	L	N	A	Y	I	T	A	.	.	.	.
Query Conservation		.	.																																																																											.	.	.	.
Alig confidence		.	.																																																																											.	.	.	.
Template Conservation
Template Sequence		A	G	A	I	G	F	I	H	E	D	W	G	T	T	P	S	A	I	N	H	A	L	D	V	A	D	K	Y	D	V	Q	V	A	I	H	T	D	T	L	N	E	A	G	C	V	E	D	T	M	A	A	I	A	G	R	T	M	H	T	F	H	T	E	G	A	G	G	G	H	A	P	D	I	I	K	V	A	G	E	H
Template Known Secondary structure		T	T		S	B				G	G	G																	T	T		B							T	T		S	S											T	T						T	T	T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G	S	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.											.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	G	I	E	N	C	H	E	S	Y	Q	L	E	E	G	R	R	K	L	Q	L	G	M	S	L	M	I	R	E	G	S	A	A	R	N	L	N	A	L	A	.	.	.	.	.	.	.	.	.	.	P	L	I	N	E	F	N	S	P	Q	C	M	L	C	T	D	D	R	N	P	W	E	I	A	H	E	G
Query Conservation		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	L	P	A	S	T	N	P	T	I	P	F	T	V	N	T	E	A	E	H	M	D	M	L	M	V	C	H	H	K	D	K	S	I	K	E	D	V	Q	F	A	D	S	R	I	R	P	Q	T	I	A	A	E	D	T	L	H	D	M	G	A	F	S	I	T	S	S	D	S	Q	A	M	G	R	V	G	E	V	I
Template Known Secondary structure		T							G	G	G		S		B	T	T												T	T	T			S	S																										T	T	S								T	T	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.													.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																									.																					.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.																									.																					.	.
Query Sequence		H	I	D	A	L	I	R	R	L	I	E	Q	H	.	.	.	.	.	.	.	.	.	.	.	.	N	V	P	L	H	V	A	Y	R	V	A	S	W	S	T	A	R	H	F	G	L	N	H	L	.	G	L	L	A	P	G	K	Q	A	D	I	V	L	L	S	D	A	R	K	V	.	.	T	V	Q	Q	V	L	V	K
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.																									.																					.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																									.																	.				.	.
Template Conservation																																																																				.
Template Sequence		T	R	T	W	Q	T	A	D	K	N	K	K	E	F	G	R	L	K	E	E	K	G	D	N	D	N	F	R	I	K	R	Y	L	S	K	Y	T	I	N	P	A	I	A	H	G	I	S	E	Y	V	G	S	V	E	V	G	K	V	A	D	L	V	L	W	S	P	.	A	F	F	G	V	K	P	N	M	I	I	K	G
Template Known Secondary structure																	S		S	S			S	S	S										G	G	G	T							T	T		T	T	T	S	S	S	S		T	T	S	B								T	.	T	T	T	T	T			S					T
Template Predicted Secondary structure																																																																				.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.
		361	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	P	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	I	A	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		453	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions