Job Description P75672 Confidence 62.20% Date Thu Jan 5 12:12:51 GMT 2012 Rank 313 Aligned Residues 93 % Identity 17% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.												.	.	100	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	W	F	T	K	M	Y	G	F	H	L	L	K	I	G	N	L	S	A	E	I	N	C	E	A	C	A	V	S	H	Q	V	N	V	S	A	Q	G	M	P	V	Q	V	Q	A	D	P	L	H	L	P	F	A	D	K	S	V	D	V	C	L	L	A	.	.	.	.	.	.	.	.	.	.	.	H	T	L	P	W
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.													.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.													.
Template Sequence		E	W	L	V	N	K	I	N	G	H	H	V	L	L	V	S	G	.	.	Y	N	L	A	L	P	T	K	R	V	T	W	.	V	A	P	L	G	V	R	G	A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H
Template Known Secondary structure						T	T	S			S							S	.	.	S					T	T	S					.				T	T		S	S		S					G	G	G				G	G	G																S	S
Template Predicted Secondary structure																			.	.													.
Template SS confidence
		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.			.	.	.	1180	.	.	.	.	.	.	.	.		.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	D	P	H	R	L	L	R	E	A	D	R	V	L	I	D	D	G	W	L	V	I	S	G	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I	R	A	Y	G
Template Known Secondary structure												G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1237	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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