Job Description P75672 Confidence 99.64% Date Thu Jan 5 12:12:51 GMT 2012 Rank 55 Aligned Residues 149 % Identity 18% Template c3ocjA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: the crystal structure of a possilbe exported protein from bordetella2 parapertussis Resolution 1.39 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.																			.	.	.	.	.	.	80	.
Predicted Secondary structure																																												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	Y	R	K	A	L	E	R	Q	L	N	P	W	F	T	K	M	Y	G	F	H	L	L	K	I	G	N	L	S	A	E	I	N	C	E	A	C	A	V	S	H	.	.	.	Q	V	N	V	S	A	Q	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	Q	V	Q	A	D	P
Query Conservation																																												.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.																								.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		R	E	R	H	G	H	F	R	R	A	L	Q	R	H	L	R	P	.	.	G	C	V	V	A	S	V	P	C	G	W	X	S	E	L	L	A	L	D	Y	S	A	C	P	G	V	Q	L	V	G	I	D	Y	D	P	E	A	L	D	G	A	T	R	L	A	A	G	H	A	L	A	G	Q	I	T	L	H	R	Q	D	A
Template Known Secondary structure																		T	.	.	T						T	T		T	T						T	S			T	T		T	T								S													T	T	S	T	T	G	G	G								G
Template Predicted Secondary structure																			.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																													.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	L	P	F	A	D	K	S	V	D	V	C	L	L	A	H	T	L	P	W	C	T	D	P	H	R	.	.	.	L	L	R	E	A	D	R	V	L	I	D	D	G	W	L	V	I	S	G	F	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	F	M	G	L	R	K	L	V	P	V	L
Query Conservation																													.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		W	K	L	D	T	R	E	G	.	Y	D	L	L	T	S	N	G	L	N	I	Y	E	P	D	D	A	R	V	T	E	L	Y	R	R	F	W	Q	A	L	K	P	G	G	A	L	V	T	S	F	L	T	P	P	P	A	L	S	P	D	S	P	W	D	X	Q	A	I	D	P	H	D	L	Q	L	Q	Q	L	V	F	T
Template Known Secondary structure		G	G					S		.								S	S	G	G	G																																	T	T	T		T	T					G	G	G	S
Template Predicted Secondary structure										.
Template SS confidence
		177	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	T	S	P	Y	N	S	R	M	F	T	L	M	R	Q	L	D	W	L	S	L	L	N	F	E	V	L	H	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	I	Q	P	R	W	N	A	L	R	T	H	A	Q	T	R	A	Q	L	E	E	A	G	F	T	D	L	R	F	E
Template Known Secondary structure			T	T			S																	T	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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