Job Description P75672 Confidence 94.05% Date Thu Jan 5 12:12:51 GMT 2012 Rank 290 Aligned Residues 108 % Identity 11% Template c3lkzB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:non-structural protein 5; PDBTitle: structural and functional analyses of a conserved hydrophobic pocket2 of flavivirus methyltransferase Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.	.	.								.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																.	.											.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Query SS confidence																																.	.											.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Query Sequence		R	Q	L	N	P	W	F	T	K	M	Y	G	F	H	L	L	K	I	G	N	L	S	A	E	I	N	C	E	A	C	.	.	A	V	S	H	Q	V	N	V	S	A	.	.	.	.	.	.	.	.	Q	G	M	P	V	Q	V	Q	A	D	P	L	H	L	.	.	.	.	.	.	.	P	F	A	D	K	S	V	D	V
Query Conservation																																.	.											.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Alig confidence																																.	.											.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	W	L	V	E	R	R	F	L	E	P	V	G	K	V	I	D	L	G	C	G	R	G	G	W	C	Y	Y	M	A	T	Q	K	R	V	Q	E	V	R	G	Y	T	K	G	G	P	G	H	E	E	P	Q	L	V	Q	S	Y	G	W	N	I	V	T	M	K	S	G	V	D	V	F	Y	R	P	S	E	C	C	D	T
Template Known Secondary structure							T	T	S											T		T	T								T	T		T	T											S	T	T	S								B	T	T	G	G	G						S			T	T	S	S						S
Template Predicted Secondary structure
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.								.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.														.
Query SS confidence																.	.	.	.	.	.	.														.
Query Sequence		C	L	L	A	H	T	L	P	W	C	T	D	P	H	.	.	.	.	.	.	.	R	L	L	R	E	A	D	R	V	L	I	D	D	.	G	W	L	V	I	S	G	F	N	P	I	S	F	M	G	L	R	K	L
Query Conservation																.	.	.	.	.	.	.														.
Alig confidence										.						.	.	.	.	.	.	.														.
Template Conservation										.
Template Sequence		L	L	C	D	I	G	E	S	.	S	S	S	A	E	V	E	E	H	R	T	I	R	V	L	E	M	V	E	D	W	L	H	R	G	P	R	E	F	C	V	K	V	L	C	P	Y	M	P	K	V	I	E	K	M
Template Known Secondary structure										.		S																					T	T										S		T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		143	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions