 |
Job Description | P32675 | Confidence | 32.67% | Date | Thu Jan 5 11:50:03 GMT 2012 |
Rank | 216 | Aligned Residues | 54 |
% Identity | 19% | Template | c2bpbB_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:sulfite\:cytochrome c oxidoreductase subunit b; |
PDBTitle: sulfite dehydrogenase from starkeya novella
|
Resolution | 1.9 Å |
|
 |
  |   |
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | C | P | W | C | A | N | P | E | S | I | S | G | K | I | Q | T | V | R | R | E | A | K | C | L | H | C | A | K | C | L | R | D | A | D | E | C | P | S | G | A | F | E | R | I | G | R | D | I | S | L | D | A | L | E | R | E | V | M | K | D | D | I | F | F | R | T | S | G | G | G | V | T | L | S | G | G | E | V | L |
Query Conservation |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|   |   |   |
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|
Template Sequence |   |
N | C | A | A | C | H | S | V | D | Y | I | N | T | Q | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | G | K | G | Q | A | F | W | D | A | E | V | Q | K | M | I | K | V | Y | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | A | P | V |
Template Known Secondary structure |   |
 | S | S | S | S | S |
| T |  |  |  |  | T | S |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
528 | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . |
  |
  |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | Q | A | E | F | A | T | R | F | L | Q | R | L | R | L | W | G |
Query Conservation |   |
|   |   |   |   |
|   |
|
|   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
| . |   |   |   |
|
|   |
|
|
|   |   |
|
Template Sequence |   |
D | E | A | D | . |
A | K | A | I | A | D | Y | L | A | K | T | Y |
Template Known Secondary structure |   |
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
566 | . | . | . | |
570 | . | . | . | . | . | . | . | . | . | 580 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|