 |
Job Description | P0AED5 | Confidence | 91.61% | Date | Thu Jan 5 11:23:03 GMT 2012 |
Rank | 198 | Aligned Residues | 53 |
% Identity | 25% | Template | c3iwfA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:transcription regulator rpir family; |
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
|
Resolution | 1.40 Å |
|
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | P | F | A | S | L | S | E | R | E | L | Q | I | M | L | M | I | T | K | G | . |
. |
. |
. |
. |
. |
Q | K | V | N | E | I | S | E | Q | L | N | L | S | P | K | T | V | N | S | Y | R | Y | R | M | F | S | K | L | N | I | H | G | D | V | E | L |
Query Conservation |   |
  |   |   |   |   |   |
|
|   |
|
|   |   |
|
|   |   |
|   |   |
| . | . | . | . | . | . |   |
|
|
|
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|
|   |   |
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|   |   |   |   |
|
|   |
|
|
| . | . | . | . |   |
|
|   |
|
|
|
|
|   |
|
|   |
|
|
Template Sequence |   |
D | N | Q | Y | P | Y | F | T | K | N | E | K | K | I | A | Q | F | I | L | N | Y | P | H | K | V | V | N | X | T | S | Q | E | I | A | N | Q | L | E | T | S | S | T | S | I | . |
. |
. |
. |
I | R | L | S | K | K | V | T | P | G | G | F | N | E | L |
Template Known Secondary structure |   |
 |  |  | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | T | S |
|  |  |  |  | . | . | . | . |  |  |  |  |  |  |  | S | T | T |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
9 | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|