Job Description Q47142 Confidence 100.00% Date Thu Jan 5 12:36:19 GMT 2012 Rank 2 Aligned Residues 361 % Identity 13% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	G	Y	F	T	Y	F	F	S	Y	G	I	F	L	P	F	W	S	V	W	L	K	G	I	G	L	T	P	E	T	I	G	L	L	L	G	A	G	L	V	A	R	F	L	G	S	L	L	I	A	P	R	V	S	D	P	S	R	L	I	S	A	L	R	V	L	A	L	L	T	L	L	F	A	V	A	F	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V	T
Template Known Secondary structure																									T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		A	G	A	H	V	A	W	L	M	L	V	M	I	G	F	N	L	F	F	S	P	L	V	P	L	T	D	A	L	A	N	T	W	Q	K	.	Q	F	P	L	D	Y	G	K	V	R	L	W	G	S	V	A	F	V	I	G	S	A	L	T	G	K	L	V	T	M	F	D	Y	R	V	I	L	A	L	L	T	L	G	V
Query Conservation																																					.
Alig confidence																																					.
Template Conservation
Template Sequence		T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C
Template Known Secondary structure																																				T	S	S			S																							S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		A	S	M	L	L	G	F	L	I	R	P	T	I	Q	P	Q	G	A	S	R	Q	Q	E	S	T	G	W	S	A	W	L	A	L	V	R	Q	N	W	R	F	L	A	C	V	C	L	L	Q	G	A	H	A	A	Y	Y	G	F	S	A	I	Y	W	Q	A	.	A	G	Y	S	A	S	A	V	G	Y	L	W	S	L	G
Query Conservation																																																																		.
Alig confidence																																																																		.
Template Conservation
Template Sequence		A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T	V	S	I	L	F	I	L	P
Template Known Secondary structure											S	S				S	T	T	T						T	T	T		S	T																														S		S	S																	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		V	V	A	E	V	I	I	F	A	L	S	N	K	L	F	R	R	C	S	A	R	D	M	L	L	I	S	A	I	C	G	V	V	R	W	G	I	M	G	A	.	.	.	T	T	A	L	P	W	L	I	V	V	Q	I	L	H	C	G	T	F	T	V	C	H	L	A	A	M	R	Y	I	A	A	R	Q	G	S	E	V
Query Conservation																																										.	.	.
Alig confidence																																										.	.	.																																			.
Template Conservation																																																																															.
Template Sequence		I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L
Template Known Secondary structure														T	T	T	T																T	S	S	S	S	S																											T	S	S	T	T						T				.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	Q	A	V	Y	S	A	V	A	M	G	G	S	I	A	I	M	T	V	F	A	G	F	L	Y	Q	Y	L	G	H	G	V	F	W	V	M	A	L	V	A	L	P	A	M	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L
Template Known Secondary structure																					S	T	T		T																							T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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