Job Description P24180 Confidence 99.89% Date Thu Jan 5 11:40:57 GMT 2012 Rank 3 Aligned Residues 251 % Identity 24% Template c3fppB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:macrolide-specific efflux protein maca; PDBTitle: crystal structure of e.coli maca Resolution 2.99 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.
Query Sequence		K	T	A	P	L	E	V	K	T	E	L	P	G	R	T	N	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	V	L	N	R	N	F	T	E	G	S	D	V	Q	A	G	Q	S	L	Y	Q	I	D	P	A	T	Y	Q	A	N	Y	D	S	A	K	G	E	.	.	.	.	.	.	.	L	A	K	S	E	A	A
Query Conservation																																																																				.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	G	D	L	Q	Q	S	V	L	A	T	G	K	L	D	A	L	R	K	V	D	V	G	A	Q	V	S	G	Q	L	K	T	L	S	V	A	I	G	D	K	V	K	K	D	Q	L	L	G	V	I	D	P	E	Q	A	E	N	Q	I	K	E	V	E	A	T	L	M	E	L	R	A	Q	R	Q	Q	A	E	A	E
Template Known Secondary structure																											S	S											T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.								.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																														.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.
Query Sequence		A	A	I	A	H	L	T	V	K	R	Y	V	P	L	V	G	T	K	Y	I	S	Q	Q	E	Y	D	Q	A	I	A	D	A	R	Q	A	D	A	A	V	I	A	A	K	A	.	.	.	.	.	.	.	T	V	E	S	A	R	I	N	L	A	Y	T	K	V	T	A	P	I	S	G	R	I	G	K	S	T	V	T	E
Query Conservation																																														.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	L	A	R	V	T	Y	S	R	Q	Q	R	L	A	Q	T	Q	A	V	S	Q	Q	D	L	D	N	A	A	T	E	M	A	V	K	Q	A	Q	I	G	T	I	D	A	Q	I	K	R	N	Q	A	S	L	D	T	A	K	T	N	L	D	Y	T	R	I	V	A	P	M	A	G	E	V	T	Q	I	T	T	L	Q
Template Known Secondary structure																		S			S	T	T								T																																T	T					S	S		S	B						S		S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	L	V	T	N	G	Q	T	T	E	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	F	M	R	L	K	Q	S	V	E	Q	G	N	L	H	K	E	N	A	T	S	N	V	E	L	V	M	E	N	G	Q	T	Y	P	L	K	G	T	L	Q	F	S	D	V	T	V	D	E	S	T
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Q	T	V	I	A	A	.	.	.	.	.	.	.	.	.	.	.	Q	Q	A	P	N	I	L	T	L	A	D	M	S	A	M	L	V	K	A	Q	V	S	E	A	D	V	I	H	L	K	P	G	Q	K	A	W	F	T	V	L	G	D	Q	L	T	R	Y	E	G	Q	I	K	D	V	L	P	T	P	E	K	V	N
Template Known Secondary structure		S						S	.	.	.	.	.	.	.	.	.	.	.	S	S																					T	T	T	T	T	S			S	S								T	T	S	S	S										B		S	S				S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.												.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		271	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		G	S	I	.	.	T	L	R	A	V	F	P	N	P	Q	H	T	L	L	P	G	M	F	V	R	A	R	I	D	E	G	V	Q	P	D	A	I	L
Query Conservation					.	.
Alig confidence					.	.
Template Conservation
Template Sequence		D	A	I	F	Y	Y	A	R	F	E	V	P	N	P	N	G	L	L	R	L	D	M	T	A	Q	V	H	I	Q	L	T	D	V	K	N	V	L	T
Template Known Secondary structure		S	S													S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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