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Job DescriptionP24180
Confidence99.91%DateThu Jan 5 11:40:57 GMT 2012
Rank2Aligned Residues228
% Identity76%Templatec2f1mA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra
Resolution2.71 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.........70.........80.........90.........100.........110.........120.........130.
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Query Sequence  KTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKRYVPL
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Template Sequence  TTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKL
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S

SS

S
TT

TTS
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TT
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   53......60.........70.........80.........90.........100.........110.........120.........130..
 
   132.......140.........150.........160.........170.........180.........190.........200.........210.
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Query Sequence  VGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPI
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Template Sequence  LGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPI
Template Known Secondary structure  TTSTT

TT

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SS
TT

TT
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S
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   133......140.........150.........160.........170.........180.........190.........200.........210..
 
   212.......220.........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  YVDVTQSSNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMF
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Template Sequence  YVDVTQSSN. . . . . . . . . . . . . . . . . DXKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTXXPGXF
Template Known Secondary structure  TT.................T




SSS
B
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   213......220. ........230.........240.........250.........260.........270.....
 
   292....
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Query Sequence  VRARI
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Template Sequence  VRARL
Template Known Secondary structure 
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   293....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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