Job Description P24180 Confidence 41.86% Date Thu Jan 5 11:40:57 GMT 2012 Rank 70 Aligned Residues 63 % Identity 14% Template c1q90A_ PDB info PDB header:photosynthesis Chain: A: PDB Molecule:apocytochrome f; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii Resolution 3.10 Å

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		68	.	70	.	.	.	.	.	.	.	.	.																																	80	.	.	.	.	.	.	.	.	.	90	.	.																.	.	.	.	.	.	.	100
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	Q	V	S	G	I	V	L	N	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	E	G	S	D	V	Q	A	G	Q	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Q	I	D	P	A	T	Y
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	S	A	A	G	K	I	V	A	I	T	A	L	S	E	K	K	G	G	F	E	V	S	I	E	K	A	N	G	E	V	V	V	D	K	I	P	A	G	P	D	L	I	V	K	E	G	Q	T	V	Q	A	D	Q	P	L	T	N	N	P	N	V	G	G	F	G	Q	A	E	T	E	I	V	L	Q	N	P	A	R
Template Known Secondary structure		B		S	S	S											T	T	T										S	S	S									S	S	S		B				T	T					T	T		B	S	B
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	N	Y	D	S	A	K	G	E	L	A	K	S	E	A	A	A	A	I	A	H	L	T	V	K	R	Y	V	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	G	L	L	V	F	F	S	F	V	L	L	T	Q	V	L	L	V	L	K	K	K	Q	F	E	K	V	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions