Job Description P76102 Confidence 89.09% Date Thu Jan 5 12:18:56 GMT 2012 Rank 35 Aligned Residues 56 % Identity 18% Template c1y1yS_ PDB info PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex Resolution 4.00 Å

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		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320										.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																															.									.	.	.	.	.	.	.	.	.
Query SS confidence																															.									.	.	.	.	.	.	.	.	.
Query Sequence		W	Y	E	M	R	R	Q	L	A	Y	K	Q	L	W	R	G	G	Q	V	L	A	V	P	P	A	Y	T	S	Q	.	R	C	A	Y	C	G	H	T	.	.	.	.	.	.	.	.	.	A	K	E	N	R	L	S	Q	S	K	F	R	C	Q	V	C	G	Y	T	A
Query Conservation																															.									.	.	.	.	.	.	.	.	.
Alig confidence																	.														.									.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		L	K	Q	K	I	E	E	I	A	K	Q	N	L	Y	N	.	A	Q	G	A	T	I	E	R	S	V	T	D	R	F	T	C	G	K	C	K	E	K	K	V	S	Y	Y	Q	L	Q	T	R	S	A	D	E	P	L	T	T	F	C	T	C	E	A	C	G	N	R	W
Template Known Secondary structure																	.	T	S										T	T				S	S	S			S										S		T	T	S									S	S	S
Template Predicted Secondary structure																	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions