 |
Job Description | P08373 | Confidence | 26.90% | Date | Thu Jan 5 11:01:23 GMT 2012 |
Rank | 63 | Aligned Residues | 83 |
% Identity | 16% | Template | c1ik6A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:pyruvate dehydrogenase; |
PDBTitle: 3d structure of the e1beta subunit of pyruvate2 dehydrogenase from the archeon pyrobaculum aerophilum
|
Resolution | 2.00 Å |
|
 |
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | |
. | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | I | V | C | A | E | D | E | Q | Q | L | L | N | A | W | Q | Y | A | T | A | E | G | Q | P | V | L | I | L | G | E | G | S | N | V | L | F | L | E | . |
D | Y | R | G | T | V | I | I | N | R | I | K | G | I | E | I | H | D | E | P | D | A | W | Y | L | H | V | G | A | G | E | N | W | H | R | L | V | K | Y | T | L |
Query Conservation |   |
  |
|
|   |
|   |
|   |
|
|
|   |   |   |
|   |   |
|   |   |   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|   |   |
| . |   |   |   |
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |
|
|
|
| . |
|
|   |
|   |   |
|   |   |
|
|   |
|
|
|
Template Sequence |   |
V | V | V | M | P | S | T | P | Y | N | A | K | G | L | L | K | A | A | I | R | G | D | D | P | V | V | F | L | E | P | K | I | L | Y | R | A | P | R | E | E | V | P | E | G | D | Y | V | V | E | I | G | K | A | R | V | A | R | E | G | D | D | V | T | L | . |
V | T | Y | G | A | V | V | H | K | A | L | E | A | A | E |
Template Known Secondary structure |   |
 |  |  |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S | S |
|  |  |  |  |  |  | G | G | G | S | S |
|
|
|  |  |  |  |
| S | S |
|
|
|
| T | T |
|
|  |  |  |  |
|
| S | S |  |  |  | . |  |  |
| T | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
148 | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | |
. | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
  |
  |   |
98 | . | 100 | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
Q | E | G | M | P |
Query Conservation |   |
  |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
Template Sequence |   |
R | V | K | A | S |
Template Known Secondary structure |   |
T | S | S | S |
|
Template Predicted Secondary structure |   |
 |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
  |   |
227 | . | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|