Phyre 2 alignment of P75691 with c1yb5A

Job Description P75691
Confidence 100.00% Date Thu Jan 5 12:13:10 GMT 2012

Rank 54 Aligned Residues 305

% Identity 22% Template c1yb5A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:quinone oxidoreductase; PDBTitle: crystal structure of human zeta-crystallin with bound nadp

Resolution 1.85 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.			.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.				.																																						.
Query SS confidence													.	.				.																																						.
Query Sequence	I	K	A	V	G	A	Y	S	A	K	Q	P	.	.	L	E	P	.	M	D	I	T	R	R	E	P	G	P	N	D	V	K	I	E	I	A	Y	C	G	V	C	H	S	D	L	H	Q	V	R	S	E	W	A	G	T	.	V	Y	P	C	V	P	G	H	E	I	V	G	R	V	V	A	V	G	D	Q	V	E	K	Y
Query Conservation													.	.				.																																						.
Alig confidence													.	.				.																																						.
Template Conservation
Template Sequence	M	R	A	V	R	V	F	E	F	G	G	P	E	V	L	K	L	R	S	D	I	A	V	P	I	P	K	D	H	Q	V	L	I	K	V	H	A	C	G	V	N	P	V	E	T	Y	I	R	S	G	T	Y	S	R	K	P	L	L	P	Y	T	P	G	S	D	V	A	G	V	I	E	A	V	G	D	N	A	S	A	F
Template Known Secondary structure							S	S		S	S	G	G	G														T	T																					T		S	S					S	S	B				S											T	T		T	T
Template Predicted Secondary structure
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	P	G	D	L	V	G	V	G	C	I	V	D	S	C	K	H	C	E	E	C	E	D	G	L	E	N	Y	C	D	H	M	T	G	T	Y	N	S	P	T	P	D	E	P	G	H	T	L	G	G	Y	S	Q	Q	I	V	V	H	E	R	Y	V	L	R	I	R	H	P	Q	E	Q	L	A	A	V	A	P	L	L	C
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	K	G	D	R	V	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	T	I	S	G	G	Y	A	E	Y	A	L	A	A	D	H	T	V	Y	K	L	P	E	K	L	D	F	K	Q	G	A	A	I	G	I	P
Template Known Secondary structure		T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S		S	S	B	S						G	G	G						T	T	S						T	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	88	.	90	.	.	.	.	.																																				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence	A	G	I	T	T	Y	S	P	L	R	H	W	Q	A	G	P	G	K	K	V	G	V	V	G	I	.	G	G	L	G	H	M	G	I	K	L	A	H	A	M	G	A	H	V	V	A	F	T	T	S	E	A	K	R	E	A	A	K	A	L	G	A	D	E	V	V	N	S	R	N	A	D	E	M	A	A	H	L	K	S
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence	Y	F	T	A	Y	R	A	L	I	H	S	A	C	V	K	A	G	E	S	V	L	V	H	G	A	S	G	G	V	G	L	A	A	C	Q	I	A	R	A	Y	G	L	K	I	L	G	T	A	G	T	E	E	G	Q	K	I	V	L	Q	N	G	A	H	E	V	F	N	H	R	E	V	N	Y	I	D	K	I	K	K	Y
Template Known Secondary structure										T	T	S				T	T							T		S	S													T	T								S	S										T	T		S					T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

					238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.																																																												.	.	.	.	.	.
Query SS confidence	.	.	.	.																																																												.	.	.	.	.	.
Query Sequence	.	.	.	.	F	D	F	I	L	N	T	V	A	A	P	H	N	L	D	D	F	T	T	L	L	K	R	D	G	T	M	T	L	V	G	A	P	A	T	P	H	K	S	P	E	V	F	N	L	I	M	K	R	R	A	I	A	G	S	M	I	G	G	.	.	.	.	.	.	I	P	E	T	Q	E	M	L	D	F	C
Query Conservation	.	.	.	.																																																												.	.	.	.	.	.
Alig confidence	.	.	.	.																																				.	.																							.	.	.	.	.	.
Template Conservation																																								.	.
Template Sequence	V	G	E	K	G	I	D	I	I	I	E	M	L	A	N	V	N	L	S	K	D	L	S	L	L	S	H	G	G	R	V	I	V	V	G	S	R	G	T	.	.	I	E	I	N	P	R	D	T	M	A	K	E	S	S	I	I	G	V	T	L	F	S	S	T	K	E	E	F	Q	Q	Y	A	A	A	L	Q	A	G	M
Template Known Secondary structure			T	T								S																										S		.	.					T					T	T	T								G	G	G
Template Predicted Secondary structure																																								.	.
Template SS confidence
	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

	308	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.
Predicted Secondary structure											.																			.
Query SS confidence											.																			.
Query Sequence	A	E	H	G	I	V	A	D	I	E	.	M	I	R	A	D	Q	I	N	E	A	Y	E	R	M	L	R	G	D	.	V	K	Y	R	F	V	I	D	N
Query Conservation											.																			.
Alig confidence											.																			.
Template Conservation
Template Sequence	E	I	G	W	L	K	P	V	I	G	S	Q	Y	P	L	E	K	V	A	E	A	H	E	N	I	I	H	G	S	G	A	T	G	K	M	I	L	L	L
Template Known Secondary structure			T												G	G	G											S	S			S	S
Template Predicted Secondary structure
Template SS confidence
	291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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