Return to main results Retrieve Phyre Job Id

Job DescriptionP06610
Confidence94.09%DateThu Jan 5 10:59:10 GMT 2012
Rank230Aligned Residues87
% Identity14%Templatec1a8yA_
PDB info PDB header:calcium-binding proteinChain: A: PDB Molecule:calsequestrin; PDBTitle: crystal structure of calsequestrin from rabbit skeletal muscle2 sarcoplasmic reticulum at 2.4 a resolution
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30..... ....40 .........50....... ..60.........70.........80.........90........
Predicted Secondary structure 


.....




.









.




















Query SS confidence 









. . . . .




.
















.








































Query Sequence  NVLLIVNVAS. . . . . KCGLT. PQYEQLENIQKAWVDRG. FMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIE
Query Conservation 




 
  
..... 

  .        
        .     
                                   
Alig confidence 









.....




.
















.








........







................
Template Conservation     

 



     

 


 
 
     
  
     
  
 


 ........    

  ................
Template Sequence  EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE. . . . . . . . KDAAVAKK. . . . . . . . . . . . . . . .
Template Known Secondary structure  S



SSTGGGTTT........TST................
Template Predicted Secondary structure 
















........

................
Template SS confidence 















































































   31........40.........50.........60.........70........ .80......
 
   99100.........110.........120.........130.........140.........150.........160.........170........
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  VNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTPEDPIVMESIK
Query Conservation                                              
      



  
 
         
    
   
 
Alig confidence  ..........................................











.



.








..








Template Conservation  ..........................................  
  



  
.  
 .   
 
   ..   
  
  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LGLTEEDSIYVF. KEDE. VIEYDGEFS. . ADTLVEFLL
Template Known Secondary structure  ..........................................TT

STT
.SSS.

S

S..
Template Predicted Secondary structure  ..........................................






.


.






..
Template SS confidence 















































































   87..90........ .100.. .......110. ........120
 
   179180..
Predicted Secondary structure 
Query SS confidence 



Query Sequence  LALA
Query Conservation   

 
Alig confidence 



Template Conservation      
Template Sequence  DVLE
Template Known Secondary structure  S
Template Predicted Secondary structure 

Template SS confidence 



   121...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions