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Job DescriptionP24230
Confidence100.00%DateThu Jan 5 11:41:25 GMT 2012
Rank6Aligned Residues399
% Identity19%Templatec4a4zA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   265....270.........280.........290.........300.........310.........320.........330.........340....
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Query Sequence  LPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPL
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Template Sequence  WPFELDTFQKEAVYHLE. . . . . . QGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFV. .
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   326...330.........340.. .......350.........360.........370.........380.........390.......
 
   345....350.........360.........370.........380....... ..390.........400.........410.. ......
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Query Sequence  GIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQ. . . . . FNGLALVIIDEQHRFGVHQRLALWE. KGQQQG
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Template Sequence  . . NIGLITGDVQI. . . . . . . . . . . NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP
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SGGGG

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   400.........410 .........420.........430.........440.........450.........460......
 
   419420......... 430.........440.........450.........460... .....
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Query Sequence  FHPHQLIMTAT. PIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PDTRR
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Template Sequence  QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNDGPSK
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TTT


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   467..470.........480.........490.........500.........510.........520.........530.........540......
 
   469470.........480.........490.........500...... ...510........
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Query Sequence  TDIIDRVHHACITEGRQAYWVCTLIEESELLEAQAAEA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TWEELKLALPEL
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Template Sequence  KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER.
Template Known Secondary structure  TTT

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   612.......620.........630.........640.........650.........660.........670.........680.........690
 
   519520.........530.........540.........550.........560.........570... ......580.........
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Query Sequence  NVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMIIENPERL. . . . . . . . GLAQLHQLRGRVGRGA.
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Template Sequence  GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLP. TRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGL
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   691........700.........710.........720.........730.. .......740.........750.........760.........
 
   590.........600.........610...... ...620.........630.........640.........650.........660.
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Query Sequence  . VASHCVLLYKTPLSKTAQIRLQVLRDS. . . . . . . NDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEV
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Template Sequence  DSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIKVL
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   770.........780.........790.........800.........810.........820.........830.........840.........
 
   662.......670.........680......
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Query Sequence  QRLARHIHERYPQQAKALIERWMPE
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Template Sequence  QEELQTKFLELMLAYKEATVNLMQE
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   850.........860.........870....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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