Job Description P24230 Confidence 100.00% Date Thu Jan 5 11:41:25 GMT 2012 Rank 13 Aligned Residues 380 % Identity 17% Template c3rc8A_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial; PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment Resolution 2.90 Å

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		149	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure							.																																			.	.
Query SS confidence							.																																			.	.
Query Sequence		T	P	V	Y	P	.	T	T	E	G	V	K	Q	A	T	L	R	K	L	T	D	Q	A	L	D	L	L	D	T	C	A	I	E	E	L	L	P	P	E	L	.	.	S	Q	G	M	M	T	L	P	E	A	L	R	T	L	H	R	P	P	P	T	L	Q	L	S	D	L	E	T	G	Q	H	P	A	Q	R	R	L	I
Query Conservation							.																																			.	.
Alig confidence							.																				.	.	.													.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	K	P	Q	G	P	S	P	L	D	K	N	E	V	K	K	V	L	D	K	F	Y	K	.	.	.	R	K	E	I	Q	K	L	G	A	D	Y	G	L	D	A	R	L	F	H	Q	A	F	I	S	F	R	N	Y	I	M	Q	S	H	S	L	D	.	.	.	.	.	.	.	.	.	.	V	D	I	H	I	V
Template Known Secondary structure																											.	.	.											T	T																					S	S			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.											.	.	130	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.							.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.
Query Sequence		L	E	E	L	L	A	H	N	L	S	M	L	A	L	R	A	G	A	Q	R	F	H	A	Q	P	L	S	A	N	D	T	L	K	N	K	L	L	A	A	L	P	F	K	P	T	G	A	Q	A	R	V	V	A	E	I	E	R	.	.	.	.	.	.	D	M	A	L	D	V	P	M	M	R	L	V	Q	G	D	V	G
Query Conservation																																																											.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	D	I	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	A	A	H	A	D	D	L	F	P	F	F	L	R	H	A	K	Q	I	F	P	V	L	D	C	K	D	D	L	R	K	I	S	D	L	R	I	P	P	N	W	Y	P	D	A	R	A	M	Q	R	K	I	I	F	H	S	G	P	T	N
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S			G	G	G	G													G	G	G	G									T	B				G	G	G	G						T	S										S	S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	T	L	V	A	A	L	A	A	L	R	A	I	A	H	G	K	Q	V	A	L	M	A	P	T	E	L	L	A	E	Q	H	A	N	N	F	R	N	W	F	A	P	L	G	I	E	V	G	W	L	A	G	K	Q	K	G	K	A	R	L	A	Q	Q	E	A	I	A	S	G	Q	V	Q	M	I	V	G	T	H
Query Conservation
Alig confidence															.	.	.	.																									.	.	.	.															.	.	.	.	.	.
Template Conservation															.	.	.	.																									.	.	.	.															.	.	.	.	.	.
Template Sequence		S	G	K	T	Y	H	A	I	Q	K	Y	F	S	.	.	.	.	A	K	S	G	V	Y	C	G	P	L	K	L	L	A	H	E	I	F	E	K	S	N	A	A	.	.	.	.	G	V	P	C	D	L	V	T	G	E	E	R	V	T	.	.	.	.	.	.	V	Q	P	N	G	K	Q	A	S	H	V	S	C	T	V
Template Known Secondary structure		S	S	T	T										.	.	.	.	S	S	S						S	S														T	.	.	.	.	T								S	S					.	.	.	.	.	.		S	S	S	S				S						G
Template Predicted Secondary structure															.	.	.	.																									.	.	.	.															.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.					.	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		A	I	F	Q	E	Q	V	Q	F	N	G	L	A	L	V	I	I	D	E	Q	H	R	F	G	V	H	Q	R	L	A	L	W	E	.	.	K	G	Q	Q	Q	G	F	H	P	H	Q	L	I	M	T	A	T	P	I	P	R	T	L	A	M	T	A	Y	A	D	L	D	T	S	V	I	D	E	L	P	P	G	R	T	P
Query Conservation																																			.	.
Alig confidence						.	.	.																											.	.																		.
Template Conservation						.	.	.																																														.
Template Sequence		E	M	C	S	.	.	.	V	T	T	P	Y	E	V	A	V	I	D	E	I	Q	M	I	R	D	P	A	R	G	W	A	W	T	R	A	L	L	G	L	C	A	E	E	V	H	L	C	G	E	P	A	A	.	I	D	L	V	M	E	L	M	Y	T	T	G	E	E	V	E	V	R	D	Y	K	R	L	T	P	I	S
Template Known Secondary structure		G	G			.	.	.	S	S	S										G	G	G	G	G		T	T	T																						G	G	G	.												T											S	S
Template Predicted Secondary structure						.	.	.																																														.
Template SS confidence
		277	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	T	V	A	I	P	D	T	R	R	T	D	I	I	D	R	V	H	H	A	C	I	T	E	G	R	Q	A	Y	W	V	C	T	L	I	E	E	S	E	L	L	E	A	Q	A	A	E	A	T	W	E	E	L	K	L	A	L	P	E	L	N	V	G	L	V	H	G	R	M	K	P	A	E	K	Q	A	V	M	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template Sequence		V	L	D	H	A	L	E	S	L	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	P	G	D	C	I	V	C	F	S	K	N	D	.	.	.	.	.	.	.	.	I	Y	S	V	S	R	Q	I	E	I	R	.	.	G	L	E	S	A	V	I	Y	G	S	L	P	P	G	T	K	L	A	Q	A	K
Template Known Secondary structure				S	S				S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						S	S				.	.	.	.	.	.	.	.											T	.	.	T								T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.												.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.														.	.	.	.	.	.	370	.	.	.	.	.	.	.									.	.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		538	.			540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.			.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.				590	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																																			.	.																	.	.	.
Query SS confidence				.	.																																			.	.																	.	.	.
Query Sequence		S	F	.	.	K	Q	G	E	L	H	L	L	V	A	T	T	V	I	E	V	G	V	D	V	P	N	A	S	L	M	I	I	E	N	P	E	R	L	.	.	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	A	.	.	.	V	A	S	H	C	V	L	L
Query Conservation				.	.																																			.	.																	.	.	.
Alig confidence				.	.																						.													.	.																	.	.	.
Template Conservation																											.
Template Sequence		K	F	N	D	P	N	D	P	C	K	I	L	V	A	T	D	A	I	G	M	G	L	N	L	S	.	I	R	R	I	I	F	Y	S	L	I	K	E	P	I	T	T	S	Q	A	L	Q	I	A	G	R	A	G	R	F	S	S	R	F	K	E	G	E	V	T	T	M
Template Known Secondary structure						T	T		S								G	G	G	G	S	S					.	B	S					S		S	B			B											T	T	B				T	T	T			S						S
Template Predicted Secondary structure																											.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.